C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00013Y_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107295-ENSG00000178031 CGP 9606 9:17579082-18910950
GeneTranscriptPositionBiotype
ENSG00000107295 (SH3GL2)
SH3-domain GRB2-like 2 		ENST00000380607 (SH3GL2-001) 17579123-17797129 protein_coding
ENST00000467085 (SH3GL2-002) 17579082-17630429 processed_transcript
ENSG00000178031 (ADAMTSL1)
ADAMTS-like 1 		ENST00000276935 (ADAMTSL1-005) 18474233-18723917 protein_coding
ENST00000327883 (ADAMTSL1-001) 18474100-18684957 protein_coding
ENST00000380538 (ADAMTSL1-014) 18829923-18890790 protein_coding
ENST00000380545 (ADAMTSL1-011) 18826138-18908609 protein_coding
ENST00000380548 (ADAMTSL1-012) 18473894-18910950 protein_coding
ENST00000380559 (ADAMTSL1-010) 18706641-18910947 retained_intron
ENST00000380566 (ADAMTSL1-002) 18474169-18681483 protein_coding
ENST00000380570 (ADAMTSL1-003) 18474153-18622619 protein_coding
ENST00000388710 (ADAMTSL1-009) 18826148-18908609 nonsense_mediated_decay
ENST00000431052 (ADAMTSL1-004) 18474144-18574527 protein_coding
ENST00000489062 (ADAMTSL1-007) 18905491-18910947 retained_intron
ENST00000496521 (ADAMTSL1-006) 18793225-18796762 processed_transcript
ENST00000542621 (ADAMTSL1-008) 18826138-18910294 nonsense_mediated_decay
ENST00000546040 (ADAMTSL1-013) 18657615-18684957 retained_intron
ENSG00000228810 (PABPC1P11)
poly(A) binding protein, cytoplasmic 1 pseudogene 11 		ENST00000428966 (PABPC1P11-001) 17589161-17591318 processed_pseudogene
ENSG00000236857 (RAP1BP1)
RAP1B, member of RAS oncogene family pseudogene 1 		ENST00000412709 (RAP1BP1-001) 18717974-18718526 processed_pseudogene
ENSG00000252960 (RN7SKP258)
RNA, 7SK small nuclear pseudogene 258 		ENST00000517151 (RN7SKP258-201) 18651147-18651450 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_00013Y_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028488-ENSMUSG00000066113 CGP 10090 4:85205126-86428385
GeneTranscriptPositionBiotype
ENSMUSG00000028488 (Sh3gl2)
SH3-domain GRB2-like 2 		ENSMUST00000030212 (Sh3gl2-001) 85205441-85389380 protein_coding
ENSMUST00000107184 (Sh3gl2-004) 85205535-85377691 protein_coding
ENSMUST00000107188 (Sh3gl2-002) 85205126-85399529 protein_coding
ENSMUST00000107189 (Sh3gl2-003) 85205469-85639195 protein_coding
ENSMUST00000133109 (Sh3gl2-005) 85376341-85387604 protein_coding
ENSMUSG00000066113 (Adamtsl1)
ADAMTS-like 1 		ENSMUST00000048885 (Adamtsl1-002) 86053923-86252973 protein_coding
ENSMUST00000107177 (Adamtsl1-005) 86276766-86428382 retained_intron
ENSMUST00000107178 (Adamtsl1-201) 86053915-86428382 protein_coding
ENSMUST00000120678 (Adamtsl1-003) 86053975-86199695 protein_coding
ENSMUST00000126654 (Adamtsl1-007) 86087799-86111316 retained_intron
ENSMUST00000130474 (Adamtsl1-009) 86053915-86087961 retained_intron
ENSMUST00000136320 (Adamtsl1-008) 86199317-86248129 protein_coding
ENSMUST00000136418 (Adamtsl1-006) 86276489-86277102 processed_transcript
ENSMUST00000141889 (Adamtsl1-001) 86053928-86428385 protein_coding
ENSMUST00000150043 (Adamtsl1-004) 86054020-86234431 retained_intron
ENSMUSG00000081862 (Gm12413)
predicted gene 12413 		ENSMUST00000121508 (Gm12413-001) 85245451-85245762 processed_pseudogene
ENSMUSG00000087349 (Gm12680)
predicted gene 12680 		ENSMUST00000147066 (Gm12680-001) 85514327-85783127 processed_transcript
ENSMUSG00000088122 (Gm26069)
predicted gene, 26069 		ENSMUST00000157497 (Gm26069-201) 85909911-85910187 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00013Y_0001ENSG00000107295ENST00000380607ENST00000467085ENSG00000178031ENST00000276935ENST00000327883ENST00000380538ENST00000380545ENST00000380548ENST00000380559ENST00000380566ENST00000380570ENST00000388710ENST00000431052ENST00000489062ENST00000496521ENST00000542621ENST00000546040ENSG00000228810ENST00000428966ENSG00000236857ENST00000412709ENSG00000252960ENST00000517151CIL_00013Y_0002ENSMUSG00000028488ENSMUST00000030212ENSMUST00000107184ENSMUST00000107188ENSMUST00000107189ENSMUST00000133109ENSMUSG00000066113ENSMUST00000048885ENSMUST00000107177ENSMUST00000107178ENSMUST00000120678ENSMUST00000126654ENSMUST00000130474ENSMUST00000136320ENSMUST00000136418ENSMUST00000141889ENSMUST00000150043ENSMUSG00000081862ENSMUST00000121508ENSMUSG00000087349ENSMUST00000147066ENSMUSG00000088122ENSMUST00000157497
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00013Y_0001ENSG00000107295ENST00000380607ENSG00000178031ENST00000276935ENST00000327883ENST00000380548ENST00000380559ENST00000380566ENST00000380570ENST00000388710ENST00000431052ENST00000489062ENST00000542621ENST00000546040ENSG00000228810ENST00000428966ENSG00000236857ENST00000412709ENSG00000252960ENST00000517151CIL_00013Y_0002ENSMUSG00000028488ENSMUST00000030212ENSMUST00000107184ENSMUST00000107188ENSMUST00000107189ENSMUST00000133109ENSMUSG00000066113ENSMUST00000048885ENSMUST00000107177ENSMUST00000107178ENSMUST00000120678ENSMUST00000136320ENSMUST00000136418ENSMUST00000141889ENSMUSG00000081862ENSMUST00000121508ENSMUSG00000087349ENSMUST00000147066ENSMUSG00000088122ENSMUST00000157497
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107295 ENST00000380607 N/A 0.040±0.00 1.470±0.00 51.864±16.02 0.198±0.08 0.195±0.09 1.390±0.95 5.186±0.00 0.009±0.00 0.637±0.06 N/A 0.352±0.34 0.162±0.08 3.852±0.25
ENST00000467085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000178031 ENST00000276935 N/A N/A 0.233±0.00 N/A N/A N/A N/A N/A N/A 0.520±0.00 N/A N/A N/A N/A
ENST00000327883 N/A N/A N/A N/A 1.778±0.00 N/A N/A N/A N/A N/A N/A 0.395±0.00 0.086±0.00 N/A
ENST00000380538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000380545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000380548 0.609±0.00 N/A N/A 0.070±0.00 0.161±0.00 0.658±0.00 N/A 0.688±0.00 0.080±0.06 0.183±0.08 N/A 0.231±0.11 N/A N/A
ENST00000380559 0.318±0.00 0.522±0.00 N/A 0.047±0.00 0.266±0.00 0.860±0.00 0.040±0.00 N/A 0.108±0.08 0.402±0.33 N/A 0.667±0.02 0.135±0.01 0.996±0.00
ENST00000380566 N/A N/A 0.319±0.00 N/A 0.655±0.00 0.733±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000380570 N/A N/A N/A N/A N/A N/A 0.664±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000388710 N/A N/A N/A N/A N/A N/A 0.257±0.00 N/A N/A N/A N/A N/A 0.263±0.00 N/A
ENST00000431052 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.560±0.00 N/A N/A N/A N/A
ENST00000489062 N/A N/A N/A N/A N/A 0.529±0.00 N/A N/A N/A N/A 0.067±0.00 0.052±0.00 N/A N/A
ENST00000496521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542621 N/A 0.934±0.00 N/A 0.162±0.01 N/A N/A 0.194±0.00 0.615±0.00 0.449±0.25 N/A 0.094±0.00 N/A N/A 0.850±0.00
ENST00000546040 N/A N/A N/A N/A 0.445±0.00 N/A 0.338±0.00 N/A N/A N/A N/A 0.665±0.00 0.159±0.00 N/A
ENSG00000228810 ENST00000428966 N/A 0.022±0.00 0.088±0.00 0.238±0.13 N/A 0.078±0.07 0.058±0.00 0.027±0.00 0.055±0.04 0.135±0.00 N/A 0.033±0.02 N/A 0.019±0.00
ENSG00000236857 ENST00000412709 0.018±0.00 N/A N/A 0.017±0.00 0.397±0.31 0.015±0.00 N/A N/A 0.183±0.00 N/A N/A 0.027±0.00 N/A N/A
ENSG00000252960 ENST00000517151 N/A N/A N/A N/A 0.935±0.00 N/A N/A N/A 1.902±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028488 ENSMUST00000030212 1.910±1.85 5.710±2.01 61.432±4.75 17.280±4.16 0.256±0.16 6.558±1.98 0.288±0.05 5.532±0.68 0.039±0.03 1.486±0.23 0.049±0.02 3.177±1.03 0.162±0.19 5.122±2.42
ENSMUST00000107184 N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A N/A N/A 0.052±0.00 6.284±0.00
ENSMUST00000107188 N/A N/A N/A N/A N/A 1.207±0.00 N/A N/A N/A N/A N/A 0.670±0.00 N/A N/A
ENSMUST00000107189 0.012±0.00 N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A
ENSMUST00000133109 N/A N/A N/A 141.820±0.00 N/A N/A N/A N/A 0.063±0.00 N/A 0.052±0.03 4.810±0.00 0.045±0.00 3.953±0.00
ENSMUSG00000066113 ENSMUST00000048885 0.863±0.00 N/A N/A N/A N/A N/A 0.290±0.00 N/A 0.080±0.01 N/A N/A N/A N/A N/A
ENSMUST00000107177 1.697±1.84 1.311±0.48 5.837±0.02 0.548±0.07 0.955±0.18 0.829±0.18 0.371±0.14 0.209±0.02 0.078±0.02 1.622±0.00 0.171±0.04 2.034±0.68 0.239±0.15 0.443±0.26
ENSMUST00000107178 1.201±0.99 0.383±0.11 2.508±0.28 0.342±0.01 0.801±0.16 N/A 0.164±0.07 0.694±0.25 0.031±0.01 0.620±0.13 0.223±0.08 1.223±0.86 0.204±0.03 0.299±0.08
ENSMUST00000120678 N/A N/A N/A N/A N/A N/A N/A N/A 0.180±0.08 N/A N/A N/A 0.158±0.07 N/A
ENSMUST00000126654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136320 N/A N/A N/A N/A N/A N/A N/A N/A 0.235±0.00 N/A N/A N/A N/A N/A
ENSMUST00000136418 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.333±0.00 N/A
ENSMUST00000141889 N/A 0.802±0.21 2.750±0.18 N/A N/A 0.416±0.00 N/A 0.306±0.00 0.090±0.04 0.685±0.00 0.128±0.08 N/A N/A N/A
ENSMUST00000150043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081862 ENSMUST00000121508 0.281±0.00 N/A 0.486±0.00 0.084±0.02 N/A 0.497±0.00 N/A 0.246±0.02 N/A N/A N/A N/A N/A 0.599±0.24
ENSMUSG00000087349 ENSMUST00000147066 0.416±0.34 0.138±0.00 0.716±0.06 0.068±0.01 0.066±0.03 0.319±0.19 0.053±0.04 0.157±0.09 0.021±0.01 0.673±0.11 0.033±0.01 0.450±0.46 0.014±0.00 0.184±0.13
ENSMUSG00000088122 ENSMUST00000157497 N/A N/A N/A N/A N/A N/A N/A 0.300±0.00 N/A N/A N/A N/A N/A N/A

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