C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543185 HDAC4-201 ENSG00000068024 9606 - 2:239048169-239400949 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartLiverOvaryENST00000543185
Transcript ID Adipose Brain Heart Liver Ovary
ENST00000543185 0.919±0.00 0.589±0.00 0.578±0.00 0.579±0.00 1.356±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UT CIL_0007UT_0001 VISTA 2:238792799-239398211
CIL_0003NG CIL_0003NG_0001 CGP 2:238848032-239401654

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IEA histone deacetylase complex
GO:0004407 IEA histone deacetylase activity
GO:0016568 IEA chromatin modification

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097644 Hdac4-001 protein_coding Mus_musculus 0 3880
ENSMUST00000008995 Hdac4-201 protein_coding Mus_musculus 0 3792
ENSMUST00000189303 Hdac4-002 processed_transcript Mus_musculus 0 3110
ENSMUST00000187308 Hdac4-004 protein_coding Mus_musculus 0 1074
ENSDART00000036277 hdac4-201 protein_coding Danio_rerio 0 854
ENSDART00000124870 hdac4-001 protein_coding Danio_rerio 0 854
ENSMUST00000186002 Hdac4-003 protein_coding Mus_musculus 0 435
ENSDART00000111435 hdac5-201 protein_coding Danio_rerio 0 424
ENSDART00000157378 hdac5-001 protein_coding Danio_rerio 0 424
ENSMUST00000191327 Hdac4-005 retained_intron Mus_musculus 0 377

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