C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000036277 hdac4-201 ENSDARG00000041204 7955 - 9:46952287-47273523 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverMuscleENSDART00000036277
Transcript ID Heart Kidney Liver Muscle
ENSDART00000036277 0.365±0.00 0.286±0.04 0.271±0.00 0.936±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IEA histone deacetylase complex
GO:0001755 IMP neural crest cell migration
GO:0004407 IEA histone deacetylase activity
GO:0016568 IEA chromatin modification
GO:0016787 IEA hydrolase activity
GO:0048701 IMP embryonic cranial skeleton morphogenesis
GO:0090299 IMP regulation of neural crest formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000008999 Hdac5-002 protein_coding Mus_musculus 5e-22 111
ENSMUST00000107150 Hdac5-019 protein_coding Mus_musculus 4e-22 111
ENSMUST00000107151 Hdac5-003 protein_coding Mus_musculus 5e-22 111
ENSMUST00000107152 Hdac5-001 protein_coding Mus_musculus 4e-22 111
ENSMUST00000110819 Hdac9-201 protein_coding Mus_musculus 0.0000000008 71
ENSMUST00000124077 Hdac5-007 nonsense_mediated_decay Mus_musculus 4e-22 111
ENSMUST00000149087 Hdac5-020 retained_intron Mus_musculus 6e-22 111
ENST00000345617 HDAC4-001 protein_coding Homo_sapiens 0 854
ENST00000430200 HDAC4-013 protein_coding Homo_sapiens 0 233
ENST00000543185 HDAC4-201 protein_coding Homo_sapiens 0 854

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