C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S6 kinase, 52kDa, polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543354 RPS6KC1-201 ENSG00000136643 9606 + 1:213051233-213273464 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000543354
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000543354 1.589±0.00 2.162±0.00 0.404±0.00 3.262±2.22 2.346±0.26 1.704±0.00 1.118±0.00 2.261±0.00 0.995±0.34 1.444±0.00 0.821±0.00 1.874±0.40 1.359±0.16 4.651±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092Y CIL_00092Y_0001 VISTA 1:213024769-213627791

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004672 IEA protein kinase activity
GO:0005524 IEA ATP binding
GO:0006468 IEA protein phosphorylation
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000061611 Rps6kc1-001 protein_coding Mus_musculus 0 2015
ENSMUST00000159367 Rps6kc1-006 nonsense_mediated_decay Mus_musculus 0 2015
ENSMUST00000162500 Rps6kc1-002 retained_intron Mus_musculus 0 1522
ENSMUST00000160889 Rps6kc1-005 nonsense_mediated_decay Mus_musculus 0 1146
ENSMUST00000159823 Rps6kc1-003 retained_intron Mus_musculus 0 857
ENSMUST00000160891 Rps6kc1-009 retained_intron Mus_musculus 0 244
ENSMUST00000159624 Rps6kc1-004 nonsense_mediated_decay Mus_musculus 8.96831e-44 183
ENSMUST00000159066 Rps6kc1-007 protein_coding Mus_musculus 4e-27 128

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