C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: amyloid beta (A4) precursor protein-binding, family B, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543538 APBB2-201 ENSG00000163697 9606 - 4:40810028-40857155 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverENST00000543538
Transcript ID Kidney Liver
ENST00000543538 1.705±0.00 0.721±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038T CIL_00038T_0001 CGP 4:40749897-41216714
CIL_00038S CIL_00038S_0001 CGP 4:40810027-41268455

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 ISS beta-amyloid binding
GO:0005515 IPI:IEA protein binding
GO:0005634 ISS nucleus
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0007050 ISS cell cycle arrest
GO:0008134 ISS transcription factor binding
GO:0016020 NAS membrane
GO:0030027 ISS lamellipodium
GO:0030308 ISS negative regulation of cell growth
GO:0030426 ISS growth cone
GO:0035556 NAS intracellular signal transduction
GO:0045202 ISS synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159786 Apbb2-001 protein_coding Mus_musculus 0 1509
ENSMUST00000160775 Apbb2-018 processed_transcript Mus_musculus 0 1247
ENSMUST00000160870 Apbb2-007 protein_coding Mus_musculus 0 1245
ENSMUST00000162955 Apbb2-002 processed_transcript Mus_musculus 0 1243
ENSMUST00000087256 Apbb2-201 protein_coding Mus_musculus 0 1242
ENSMUST00000159512 Apbb2-003 protein_coding Mus_musculus 0 1242
ENSMUST00000162349 Apbb2-004 protein_coding Mus_musculus 0 1242
ENSMUST00000162366 Apbb2-008 protein_coding Mus_musculus 0 1221
ENSMUST00000161771 Apbb2-019 processed_transcript Mus_musculus 0 750
ENSMUST00000160054 Apbb2-020 retained_intron Mus_musculus 5.99756e-43 182
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000003 60

Loading