C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: amyloid beta (A4) precursor protein-binding, family B, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159786 Apbb2-001 ENSMUSG00000029207 10090 - 5:66298861-66618828 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000159786
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000159786 2.958±1.45 2.867±0.49 1.925±0.28 3.576±2.27 1.788±0.67 0.574±0.18 1.554±0.22 2.433±0.69 0.244±0.12 5.461±1.62 2.921±1.17 2.884±1.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038T CIL_00038T_0002 CGP 5:66259912-66618828
CIL_00038S CIL_00038S_0002 CGP 5:66298861-66687231

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IGI neuron migration
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007050 IDA cell cycle arrest
GO:0007411 IGI axon guidance
GO:0008134 IDA transcription factor binding
GO:0030048 NAS actin filament-based movement
GO:0030198 IGI extracellular matrix organization
GO:0030308 IDA negative regulation of cell growth
GO:0035035 NAS histone acetyltransferase binding
GO:0043065 IDA positive regulation of apoptotic process
GO:0043066 IGI negative regulation of apoptotic process
GO:0050821 NAS protein stabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295974 APBB2-002 protein_coding Homo_sapiens 0 3487
ENST00000299402 APBB1-002 protein_coding Homo_sapiens 0.000000000003 79
ENST00000311051 APBB1-001 protein_coding Homo_sapiens 0.000000000003 79
ENST00000389906 APBB1-201 protein_coding Homo_sapiens 0.000000000003 79
ENST00000502687 APBB2-031 retained_intron Homo_sapiens 0 424
ENST00000502841 APBB2-007 protein_coding Homo_sapiens 0 1269
ENST00000503264 APBB2-019 protein_coding Homo_sapiens 5e-33 145
ENST00000503503 APBB2-016 protein_coding Homo_sapiens 2e-22 110
ENST00000504305 APBB2-025 protein_coding Homo_sapiens 0 1123
ENST00000504484 APBB2-008 retained_intron Homo_sapiens 0 399
ENST00000506352 APBB2-012 protein_coding Homo_sapiens 0 1681
ENST00000507831 APBB2-024 processed_transcript Homo_sapiens 0 628
ENST00000508593 APBB2-003 protein_coding Homo_sapiens 0 3232
ENST00000508676 APBB2-010 protein_coding Homo_sapiens 1.99965e-42 176
ENST00000508707 APBB2-018 protein_coding Homo_sapiens 0 311
ENST00000509446 APBB2-020 protein_coding Homo_sapiens 0 564
ENST00000509475 APBB2-004 retained_intron Homo_sapiens 0 1205
ENST00000510670 APBB2-026 protein_coding Homo_sapiens 0 566
ENST00000510925 APBB2-030 nonsense_mediated_decay Homo_sapiens 0 859
ENST00000511120 APBB2-022 retained_intron Homo_sapiens 0 405
ENST00000512510 APBB2-029 protein_coding Homo_sapiens 0 702
ENST00000513140 APBB2-001 protein_coding Homo_sapiens 0 2015
ENST00000513493 APBB2-023 protein_coding Homo_sapiens 0 556
ENST00000513516 APBB2-027 protein_coding Homo_sapiens 0 503
ENST00000513611 APBB2-006 protein_coding Homo_sapiens 0 1799
ENST00000514094 APBB2-021 retained_intron Homo_sapiens 0 643
ENST00000514920 APBB2-028 protein_coding Homo_sapiens 0 547
ENST00000526925 APBB1-017 retained_intron Homo_sapiens 0.000000000001 79
ENST00000529890 APBB1-004 protein_coding Homo_sapiens 0.000000000001 79
ENST00000530885 APBB1-007 protein_coding Homo_sapiens 0.000000000002 79
ENST00000532020 APBB1-026 protein_coding Homo_sapiens 0.0000000000004 79
ENST00000533139 APBB1-003 retained_intron Homo_sapiens 0.000000000001 79
ENST00000533407 APBB1-016 retained_intron Homo_sapiens 0.000000000001 79
ENST00000534188 APBB1-008 retained_intron Homo_sapiens 0.000000000001 79
ENST00000543538 APBB2-201 protein_coding Homo_sapiens 0 1509
ENST00000608394 APBB1-005 protein_coding Homo_sapiens 0.000000000002 79
ENST00000608435 APBB1-011 non_stop_decay Homo_sapiens 0.000000000002 79
ENST00000608645 APBB1-025 protein_coding Homo_sapiens 0.000000000002 79
ENST00000608655 APBB1-024 protein_coding Homo_sapiens 0.000000000002 79
ENST00000608704 APBB1-014 protein_coding Homo_sapiens 0.000000000002 79
ENST00000609331 APBB1-018 protein_coding Homo_sapiens 0.000000000002 79
ENST00000609360 APBB1-023 protein_coding Homo_sapiens 0.000000000003 79
ENST00000610474 APBB1-202 protein_coding Homo_sapiens 0.000000000002 79
ENST00000618005 APBB1-203 protein_coding Homo_sapiens 0.000000000002 79
ENST00000621678 APBB1-204 protein_coding Homo_sapiens 0.000000000002 79

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