C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histidine decarboxylase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543581 HDC-004 ENSG00000140287 9606 - 15:50242013-50265666 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLungOvaryPlacentaTestisENST00000543581
Transcript ID Brain Heart Kidney Lung Ovary Placenta Testis
ENST00000543581 0.045±0.00 0.135±0.00 0.207±0.00 3.235±0.00 0.063±0.00 0.124±0.00 0.382±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E7 CIL_0002E7_0001 CGP 15:50182196-50266026
CIL_0002E6 CIL_0002E6_0001 CGP 15:50241947-50355408

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001694 IEA histamine biosynthetic process
GO:0004398 IDA histidine decarboxylase activity
GO:0005829 TAS cytosol
GO:0006547 TAS histidine metabolic process
GO:0006548 IDA histidine catabolic process
GO:0016831 IEA carboxy-lyase activity
GO:0019752 IEA carboxylic acid metabolic process
GO:0030170 IEA pyridoxal phosphate binding
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0042423 IEA catecholamine biosynthetic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028838 Hdc-001 protein_coding Mus_musculus 0 1225
ENSMUST00000138752 Hdc-002 retained_intron Mus_musculus 0 723
ENSMUST00000148591 Hdc-005 processed_transcript Mus_musculus 0 255

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