C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sec1 family domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000544052 SCFD1-004 ENSG00000092108 9606 + 14:30622319-30735789 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000544052
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000544052 4.521±0.00 4.597±0.00 2.103±0.00 2.944±1.12 5.325±0.00 4.456±1.71 4.993±0.00 4.413±2.27 5.890±0.00 3.035±0.19 2.868±0.00 7.367±1.95 4.635±2.20 4.829±1.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000893 CIL_000893_0001 VISTA 14:30219860-30821737
CIL_0003SX CIL_0003SX_0001 CGP 14:30559123-30735812
CIL_0007KV CIL_0007KV_0002 UCNEbase 14:30606668-30894124
CIL_0003T0 CIL_0003T0_0001 CGP 14:30622112-30895065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 ISS cell morphogenesis
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005798 ISS Golgi-associated vesicle
GO:0005801 IDA cis-Golgi network
GO:0005886 ISS plasma membrane
GO:0006890 ISS retrograde vesicle-mediated transport, Golgi to ER
GO:0006892 ISS post-Golgi vesicle-mediated transport
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0006909 ISS phagocytosis
GO:0009636 IEP response to toxic substance
GO:0015031 IEA protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0017119 ISS Golgi transport complex
GO:0019905 ISS syntaxin binding
GO:0031201 ISS SNARE complex
GO:0060628 ISS regulation of ER to Golgi vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021335 Scfd1-201 protein_coding Mus_musculus 0 2459

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