C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: surfeit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000545297 SURF4-201 ENSG00000148248 9606 - 9:133361450-133376166 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalHeartOvaryPlacentaTestisENST00000545297
Transcript ID Adrenal Heart Ovary Placenta Testis
ENST00000545297 6.584±0.00 1.082±0.00 7.043±0.00 27.193±0.00 18.128±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DE CIL_0006DE_0001 CGP 9:133356552-133376166
CIL_0006DD CIL_0006DD_0001 CGP 9:133361449-133406096

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0007030 IMP Golgi organization
GO:0010638 IMP positive regulation of organelle organization
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000015011 Surf4-001 protein_coding Mus_musculus 0 544
ENSMUST00000153641 Surf4-003 nonsense_mediated_decay Mus_musculus 0 350
ENSMUST00000015017 Surf2-001 protein_coding Mus_musculus 2e-39 169
ENSMUST00000126947 Surf2-002 processed_transcript Mus_musculus 2e-38 165
ENSMUST00000135506 Surf2-006 retained_intron Mus_musculus 3e-37 161

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