C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger CCCH-type containing 11A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000545588 ZC3H11A-201 ENSG00000058673 9606 + 1:203799335-203854118 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000545588
Transcript ID Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000545588 2.517±0.00 4.328±0.00 9.116±0.00 9.168±0.00 1.894±0.00 2.031±0.12 4.510±3.63 8.747±5.19 0.908±0.00 6.985±4.13 1.017±0.00 4.179±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096T CIL_00096T_0001 VISTA 1:203391843-203993678
CIL_0008W2 CIL_0008W2_0001 VISTA 1:203635137-204239984

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000346 IDA transcription export complex
GO:0005515 IPI protein binding
GO:0016973 IMP poly(A)+ mRNA export from nucleus
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027736 Zbed6-201 protein_coding Mus_musculus 0 2265
ENSMUST00000179598 Zbed6-202 protein_coding Mus_musculus 0 2170
ENSMUST00000186476 Zbed6-001 nonsense_mediated_decay Mus_musculus 0 2170
ENSMUST00000190574 ZBED6-001 protein_coding Mus_musculus 0 1402

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