C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: slingshot protein phosphatase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000546433 SSH1-004 ENSG00000084112 9606 - 12:108784797-108807690 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000546433
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000546433 2.856±0.00 1.490±0.00 1.061±0.00 1.382±0.35 1.585±0.22 1.763±0.18 1.271±0.71 1.028±0.03 2.349±0.00 0.948±0.00 2.733±0.10 1.979±1.26 1.547±0.50 2.425±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GO CIL_0001GO_0002 CGP 12:108645109-108857590
CIL_0001VP CIL_0001VP_0001 CGP 12:108778192-108901043

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077689 Ssh1-003 protein_coding Mus_musculus 0 403
ENSMUST00000112298 Ssh1-002 protein_coding Mus_musculus 0 403
ENSMUST00000159592 Ssh1-001 protein_coding Mus_musculus 0 403

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