C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000548097 KRT4-002 ENSG00000170477 9606 - 12:52806600-52814116 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonLungOvaryPlacentaTestisENST00000548097
Transcript ID Adipose Colon Lung Ovary Placenta Testis
ENST00000548097 0.860±0.00 0.021±0.00 1.564±0.00 41.073±47.59 0.067±0.02 0.019±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_000L CGP 12:52789685-52814551
CIL_00033Q CIL_00033Q_000C CGP 12:52806549-52834295

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023797 Krt4-201 protein_coding Mus_musculus 0 963
ENSMUST00000063292 Krt73-001 protein_coding Mus_musculus 0 538
ENSMUST00000023709 Krt5-001 protein_coding Mus_musculus 0 442
ENSMUST00000071104 Krt72-001 protein_coding Mus_musculus 0 431
ENSMUST00000088018 Krt74-201 protein_coding Mus_musculus 0 331
ENSMUST00000127671 Krt72-002 processed_transcript Mus_musculus 3e-40 171

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