C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: twinfilin actin-binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000548315 TWF1-005 ENSG00000151239 9606 - 12:43795493-43806249 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000548315
Transcript ID Brain
ENST00000548315 3.109±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006R5 CIL_0006R5_0001 CGP 12:43758944-43806375
CIL_0006R8 CIL_0006R8_0001 CGP 12:43793723-44389762

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0003785 IEA actin monomer binding
GO:0004713 IEA protein tyrosine kinase activity
GO:0005546 IEA phosphatidylinositol-4,5-bisphosphate binding
GO:0005622 IEA intracellular
GO:0005911 IEA cell-cell junction
GO:0015629 IEA actin cytoskeleton
GO:0018108 IEA peptidyl-tyrosine phosphorylation
GO:0030016 IEA myofibril
GO:0030175 IEA filopodium
GO:0030837 IEA negative regulation of actin filament polymerization
GO:0032587 IEA ruffle membrane
GO:0042989 IEA sequestering of actin monomers
GO:0048471 IEA perinuclear region of cytoplasm
GO:0051016 IEA barbed-end actin filament capping

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023087 Twf1-001 protein_coding Mus_musculus 0 1297
ENSMUST00000122230 Gm4887-001 processed_pseudogene Mus_musculus 0 1177
ENSMUST00000155654 Twf1-003 processed_transcript Mus_musculus 0 568
ENSMUST00000152590 Twf1-002 protein_coding Mus_musculus 0 409
ENSMUST00000127347 Twf1-004 retained_intron Mus_musculus 0 289
ENSMUST00000109248 Irak4-002 protein_coding Mus_musculus 0 220

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