C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006R5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198001-ENSG00000151239 CGP 9606 12:43758944-43806375
GeneTranscriptPositionBiotype
ENSG00000151239 (TWF1)
twinfilin actin-binding protein 1 		ENST00000395510 (TWF1-001) 43793723-43806375 protein_coding
ENST00000546506 (TWF1-006) 43800474-43806316 protein_coding
ENST00000546662 (TWF1-007) 43797302-43806296 protein_coding
ENST00000547459 (TWF1-004) 43793725-43806262 nonsense_mediated_decay
ENST00000547564 (TWF1-010) 43802284-43806282 processed_transcript
ENST00000547961 (TWF1-011) 43804153-43806255 retained_intron
ENST00000548315 (TWF1-005) 43795493-43806249 protein_coding
ENST00000548403 (TWF1-012) 43799462-43806300 protein_coding
ENST00000550371 (TWF1-008) 43799417-43806328 nonsense_mediated_decay
ENST00000551789 (TWF1-009) 43795556-43797851 retained_intron
ENST00000552521 (TWF1-003) 43793723-43806287 protein_coding
ENSG00000198001 (IRAK4)
interleukin-1 receptor-associated kinase 4 		ENST00000431837 (IRAK4-201) 43758944-43789543 protein_coding
ENST00000440781 (IRAK4-005) 43758944-43786975 protein_coding
ENST00000448290 (IRAK4-001) 43758955-43788096 protein_coding
ENST00000546780 (IRAK4-009) 43758967-43768592 retained_intron
ENST00000547101 (IRAK4-004) 43758961-43786903 nonsense_mediated_decay
ENST00000547521 (IRAK4-007) 43758951-43786414 nonsense_mediated_decay
ENST00000547928 (IRAK4-012) 43773795-43782472 retained_intron
ENST00000550361 (IRAK4-008) 43759036-43772956 nonsense_mediated_decay
ENST00000550386 (IRAK4-003) 43758961-43786903 nonsense_mediated_decay
ENST00000550615 (IRAK4-006) 43758950-43786750 nonsense_mediated_decay
ENST00000550616 (IRAK4-011) 43758950-43771326 protein_coding
ENST00000551736 (IRAK4-002) 43758961-43786903 protein_coding
ENST00000552309 (IRAK4-010) 43758967-43782490 nonsense_mediated_decay
ENST00000613694 (IRAK4-202) 43758944-43789543 protein_coding
ENSG00000276981 (RP11-210N13.4)
 ENST00000621343 (RP11-210N13.4-001) 43789005-43789541 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0006R5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000059883-ENSMUSG00000022451 CGP 10090 15:94543643-94589889
GeneTranscriptPositionBiotype
ENSMUSG00000022451 (Twf1)
twinfilin, actin-binding protein, homolog 1 (Drosophila) 		ENSMUST00000023087 (Twf1-001) 94577951-94589879 protein_coding
ENSMUST00000127347 (Twf1-004) 94581020-94581386 retained_intron
ENSMUST00000152590 (Twf1-002) 94584443-94589889 protein_coding
ENSMUST00000155654 (Twf1-003) 94579666-94585475 processed_transcript
ENSMUSG00000059883 (Irak4)
interleukin-1 receptor-associated kinase 4 		ENSMUST00000074936 (Irak4-001) 94543643-94568306 protein_coding
ENSMUST00000109248 (Irak4-002) 94543672-94581815 protein_coding
ENSMUST00000138306 (Irak4-003) 94543653-94556953 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006R5_0001ENSG00000151239ENST00000395510ENST00000546506ENST00000546662ENST00000547459ENST00000547564ENST00000547961ENST00000548315ENST00000548403ENST00000550371ENST00000551789ENST00000552521ENSG00000198001ENST00000431837ENST00000440781ENST00000448290ENST00000546780ENST00000547101ENST00000547521ENST00000547928ENST00000550361ENST00000550386ENST00000550615ENST00000550616ENST00000551736ENST00000552309ENST00000613694ENSG00000276981ENST00000621343CIL_0006R5_0002ENSMUSG00000022451ENSMUST00000023087ENSMUST00000127347ENSMUST00000152590ENSMUST00000155654ENSMUSG00000059883ENSMUST00000074936ENSMUST00000109248ENSMUST00000138306
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006R5_0001ENSG00000151239ENST00000395510ENST00000546662ENST00000547459ENST00000548315ENST00000551789ENST00000552521ENSG00000198001ENST00000431837ENST00000440781ENST00000448290ENST00000547101ENST00000547521ENST00000550615ENST00000551736ENST00000613694ENSG00000276981ENST00000621343CIL_0006R5_0002ENSMUSG00000022451ENSMUST00000023087ENSMUST00000155654ENSMUSG00000059883ENSMUST00000074936ENSMUST00000138306
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000151239 ENST00000395510 10.227±0.00 13.315±0.00 N/A 5.787±1.05 9.737±4.37 14.302±1.91 1.395±0.71 22.017±0.00 4.531±0.82 3.909±1.12 N/A 12.964±1.25 7.371±1.50 10.200±6.29
ENST00000546506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.728±0.00 N/A N/A N/A
ENST00000547459 N/A N/A 1.107±0.00 0.914±0.00 N/A N/A N/A N/A N/A 2.208±0.00 N/A N/A N/A 1.020±0.00
ENST00000547564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548315 N/A N/A N/A 3.109±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551789 N/A N/A N/A N/A N/A N/A 1.353±0.00 N/A N/A N/A N/A 10.509±0.00 4.738±0.00 5.076±0.00
ENST00000552521 3.518±0.00 N/A 3.090±0.00 N/A 7.766±0.00 N/A N/A 3.269±0.00 4.410±0.00 2.084±0.00 0.764±0.00 3.438±0.00 0.945±0.00 N/A
ENSG00000198001 ENST00000431837 N/A 2.390±0.00 0.161±0.00 0.729±0.00 N/A 2.259±0.00 0.291±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000440781 N/A N/A 0.622±0.00 N/A 1.788±0.00 N/A N/A N/A N/A 3.662±0.00 N/A N/A N/A N/A
ENST00000448290 N/A N/A N/A N/A 1.400±0.00 1.112±0.00 0.329±0.00 1.011±0.00 N/A 1.405±0.00 0.217±0.00 0.860±0.00 0.885±0.19 N/A
ENST00000546780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547101 N/A N/A N/A 0.511±0.00 N/A N/A N/A N/A N/A 0.986±0.00 N/A N/A N/A N/A
ENST00000547521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.107±0.00
ENST00000547928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550615 N/A N/A N/A N/A N/A N/A N/A 0.971±0.00 N/A N/A N/A N/A N/A N/A
ENST00000550616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551736 N/A N/A 0.564±0.00 N/A N/A 0.986±0.00 0.196±0.00 N/A N/A N/A N/A N/A N/A 1.117±0.00
ENST00000552309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613694 N/A N/A 0.151±0.00 N/A N/A N/A N/A N/A 0.504±0.00 0.496±0.00 N/A 0.615±0.08 N/A 1.600±0.00
ENSG00000276981 ENST00000621343 N/A N/A N/A N/A 3.881±0.00 N/A N/A N/A N/A N/A N/A 11.189±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022451 ENSMUST00000023087 29.273±1.24 14.602±1.98 40.975±2.15 15.200±8.40 15.728±5.08 38.545±4.59 3.671±1.35 33.751±2.34 12.607±3.08 20.012±1.22 2.031±0.45 28.336±7.81 22.503±11.68 6.370±2.48
ENSMUST00000127347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155654 N/A N/A N/A 8.274±0.00 N/A N/A N/A N/A N/A N/A N/A 20.927±0.00 27.339±9.19 5.179±0.00
ENSMUSG00000059883 ENSMUST00000074936 4.722±0.29 4.751±1.14 6.970±0.64 N/A 4.842±0.63 8.280±1.75 1.325±0.17 4.758±0.31 3.124±0.66 4.538±0.77 0.480±0.08 5.609±0.68 9.169±1.34 2.115±0.75
ENSMUST00000109248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138306 N/A N/A N/A N/A N/A 12.255±1.34 N/A N/A N/A N/A N/A N/A N/A N/A

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