C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: slingshot protein phosphatase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000548522 SSH1-005 ENSG00000084112 9606 - 12:108807675-108857513 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GO CIL_0001GO_0002 CGP 12:108645109-108857590
CIL_0001VP CIL_0001VP_0001 CGP 12:108778192-108901043

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077689 Ssh1-003 protein_coding Mus_musculus 0 606
ENSMUST00000159592 Ssh1-001 protein_coding Mus_musculus 0 606
ENSMUST00000159510 Ssh1-004 nonsense_mediated_decay Mus_musculus 0 401
ENSMUST00000112298 Ssh1-002 protein_coding Mus_musculus 0 296
ENSMUST00000162396 Ssh1-005 protein_coding Mus_musculus 0 209
ENSMUST00000162322 Ssh1-006 retained_intron Mus_musculus 2e-33 147
ENSDART00000113436 ssh2b-201 protein_coding Danio_rerio 5e-24 115
ENSDART00000137444 ssh2b-001 protein_coding Danio_rerio 5e-24 115

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