C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: carbohydrate (chondroitin 4) sulfotransferase 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000549260 CHST11-002 ENSG00000171310 9606 + 12:104456971-104762014 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000549260
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000549260 0.649±0.00 3.080±0.00 0.534±0.00 2.603±1.88 1.342±0.09 1.421±0.28 0.609±0.41 1.229±0.68 0.949±0.00 1.805±1.26 0.233±0.00 0.926±0.42 4.573±0.64 3.928±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TA CIL_0002TA_0001 CGP 12:104455295-104958744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0001537 IDA N-acetylgalactosamine 4-O-sulfotransferase activity
GO:0005975 TAS carbohydrate metabolic process
GO:0008146 IEA sulfotransferase activity
GO:0016020 IDA membrane
GO:0016021 IEA:NAS integral component of membrane
GO:0016051 IEA carbohydrate biosynthetic process
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 IDA chondroitin sulfate biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0047756 IDA chondroitin 4-sulfotransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040110 Chst11-001 protein_coding Mus_musculus 0 1738
ENSMUST00000043050 Chst12-001 protein_coding Mus_musculus 1e-18 100

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