C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000550844 ATXN2-012 ENSG00000204842 9606 - 12:111453486-111470240 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENST00000550844
Transcript ID Colon
ENST00000550844 2.427±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TJ CIL_0008TJ_0001 VISTA 12:110911282-111513646

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051950 Atxn2-001 protein_coding Mus_musculus 0 734
ENSMUST00000161159 Atxn2-012 protein_coding Mus_musculus 0 660
ENSMUST00000159928 Atxn2-013 retained_intron Mus_musculus 0 577
ENSMUST00000162327 Atxn2-007 protein_coding Mus_musculus 0 490
ENSMUST00000162995 Atxn2-011 protein_coding Mus_musculus 0 475
ENSMUST00000161064 Atxn2-002 protein_coding Mus_musculus 0 475
ENSMUST00000161433 Atxn2-016 retained_intron Mus_musculus 0 466
ENSMUST00000161836 Atxn2-015 retained_intron Mus_musculus 0 374
ENSMUST00000160462 Atxn2-014 nonsense_mediated_decay Mus_musculus 0 252
ENSMUST00000160220 Atxn2-017 nonsense_mediated_decay Mus_musculus 7.00649e-44 183

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