C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051950 Atxn2-001 ENSMUSG00000042605 10090 + 5:121711609-121814949 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051950
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051950 5.624±0.52 8.195±0.92 5.040±0.54 9.141±0.24 4.212±0.33 7.438±1.26 4.643±1.31 6.219±1.25 4.171±0.86 5.420±0.62 3.740±0.88 9.452±2.60 4.004±0.07 15.523±6.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TJ CIL_0008TJ_0002 VISTA 5:121625608-122227679

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002091 IEA negative regulation of receptor internalization
GO:0005154 IEA epidermal growth factor receptor binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005802 IEA trans-Golgi network
GO:0005844 IEA polysome
GO:0008022 IEA protein C-terminus binding
GO:0010494 IEA cytoplasmic stress granule
GO:0016020 IEA membrane
GO:0021702 IMP cerebellar Purkinje cell differentiation
GO:0030529 IEA ribonucleoprotein complex
GO:0033962 IEA cytoplasmic mRNA processing body assembly
GO:0034063 IEA stress granule assembly
GO:0040015 IMP negative regulation of multicellular organism growth
GO:0044822 IEA poly(A) RNA binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048812 IMP neuron projection morphogenesis
GO:0048872 IMP homeostasis of number of cells
GO:0050905 IMP neuromuscular process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000377617 ATXN2-001 protein_coding Homo_sapiens 0 5049
ENST00000389153 ATXN2-002 protein_coding Homo_sapiens 0 5051
ENST00000389154 ATXN2-004 protein_coding Homo_sapiens 0 1491
ENST00000392645 ATXN2-003 retained_intron Homo_sapiens 0 1764
ENST00000468920 ATXN2-015 retained_intron Homo_sapiens 0 477
ENST00000471866 ATXN2-007 retained_intron Homo_sapiens 0 669
ENST00000475132 ATXN2-013 protein_coding Homo_sapiens 0 418
ENST00000481331 ATXN2-008 processed_transcript Homo_sapiens 0 244
ENST00000482777 ATXN2-006 retained_intron Homo_sapiens 0 492
ENST00000483311 ATXN2-005 nonsense_mediated_decay Homo_sapiens 0 2918
ENST00000484991 ATXN2-014 retained_intron Homo_sapiens 0 815
ENST00000492467 ATXN2-009 protein_coding Homo_sapiens 0 651
ENST00000495342 ATXN2-010 retained_intron Homo_sapiens 0 651
ENST00000535949 ATXN2-016 protein_coding Homo_sapiens 0 3024
ENST00000542287 ATXN2-011 protein_coding Homo_sapiens 0 3845
ENST00000546483 ATXN2-020 retained_intron Homo_sapiens 0 662
ENST00000548492 ATXN2-018 protein_coding Homo_sapiens 0 627
ENST00000549455 ATXN2-017 processed_transcript Homo_sapiens 0 340
ENST00000550104 ATXN2-201 protein_coding Homo_sapiens 0 4966
ENST00000550236 ATXN2-019 protein_coding Homo_sapiens 0 545
ENST00000550844 ATXN2-012 protein_coding Homo_sapiens 0 734
ENST00000550889 ATXN2-023 retained_intron Homo_sapiens 0 237
ENST00000551551 ATXN2-024 retained_intron Homo_sapiens 0 285
ENST00000551755 ATXN2-021 nonsense_mediated_decay Homo_sapiens 0 455
ENST00000552323 ATXN2-022 retained_intron Homo_sapiens 0 407
ENST00000608853 ATXN2-025 protein_coding Homo_sapiens 0 5049
ENST00000616825 ATXN2-202 protein_coding Homo_sapiens 0 3024

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