C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162327 Atxn2-007 ENSMUSG00000042605 10090 + 5:121795034-121811629 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000162327
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000162327 14.292±1.17 30.647±5.70 47.921±0.00 10.628±2.15 18.411±4.07 13.010±2.31 14.861±1.67 14.165±3.78 16.386±1.34 32.868±7.28 7.297±0.36 25.757±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TJ CIL_0008TJ_0002 VISTA 5:121625608-122227679

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0021702 IMP cerebellar Purkinje cell differentiation
GO:0040015 IMP negative regulation of multicellular organism growth
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048812 IMP neuron projection morphogenesis
GO:0048872 IMP homeostasis of number of cells
GO:0050905 IMP neuromuscular process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000377617 ATXN2-001 protein_coding Homo_sapiens 0 976
ENST00000389153 ATXN2-002 protein_coding Homo_sapiens 0 948
ENST00000389154 ATXN2-004 protein_coding Homo_sapiens 0 878
ENST00000468920 ATXN2-015 retained_intron Homo_sapiens 0 492
ENST00000475132 ATXN2-013 protein_coding Homo_sapiens 2e-23 113
ENST00000482777 ATXN2-006 retained_intron Homo_sapiens 0 852
ENST00000483311 ATXN2-005 nonsense_mediated_decay Homo_sapiens 0 520
ENST00000492467 ATXN2-009 protein_coding Homo_sapiens 0 265
ENST00000495342 ATXN2-010 retained_intron Homo_sapiens 0 612
ENST00000535949 ATXN2-016 protein_coding Homo_sapiens 0 1452
ENST00000542287 ATXN2-011 protein_coding Homo_sapiens 0 976
ENST00000546483 ATXN2-020 retained_intron Homo_sapiens 5e-19 100
ENST00000550104 ATXN2-201 protein_coding Homo_sapiens 0 976
ENST00000550844 ATXN2-012 protein_coding Homo_sapiens 0 490
ENST00000550889 ATXN2-023 retained_intron Homo_sapiens 0 599
ENST00000551551 ATXN2-024 retained_intron Homo_sapiens 0 287
ENST00000551755 ATXN2-021 nonsense_mediated_decay Homo_sapiens 0 409
ENST00000552323 ATXN2-022 retained_intron Homo_sapiens 0 396
ENST00000608853 ATXN2-025 protein_coding Homo_sapiens 0 976
ENST00000616825 ATXN2-202 protein_coding Homo_sapiens 0 1452

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