C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ataxin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204842 ATXN2 9606 - 12:111452214-111599676 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000377617 ATXN2-001 111452214-111599676 protein_coding
  ENST00000389153 ATXN2-002 111452214-111598822 protein_coding
  ENST00000389154 ATXN2-004 111452214-111488612 protein_coding
  ENST00000392645 ATXN2-003 111512473-111598566 retained_intron
  ENST00000468920 ATXN2-015 111455915-111457439 retained_intron
  ENST00000471866 ATXN2-007 111519913-111552734 retained_intron
  ENST00000475132 ATXN2-013 111453320-111456112 protein_coding
  ENST00000481331 ATXN2-008 111513474-111519967 processed_transcript
  ENST00000482777 ATXN2-006 111452451-111470841 retained_intron
  ENST00000483311 ATXN2-005 111452296-111599276 nonsense_mediated_decay
  ENST00000484991 ATXN2-014 111452431-111454059 retained_intron
  ENST00000492467 ATXN2-009 111486791-111516339 protein_coding
  ENST00000495342 ATXN2-010 111469818-111485850 retained_intron
  ENST00000535949 ATXN2-016 111452754-111599673 protein_coding
  ENST00000542287 ATXN2-011 111452754-111599673 protein_coding
  ENST00000546483 ATXN2-020 111488585-111512107 retained_intron
  ENST00000548492 ATXN2-018 111520020-111597807 protein_coding
  ENST00000549455 ATXN2-017 111520005-111599062 processed_transcript
  ENST00000550104 ATXN2-201 111452268-111599676 protein_coding
  ENST00000550236 ATXN2-019 111509919-111520945 protein_coding
  ENST00000550844 ATXN2-012 111453486-111470240 protein_coding
  ENST00000550889 ATXN2-023 111456221-111471945 retained_intron
  ENST00000551551 ATXN2-024 111456189-111458401 retained_intron
  ENST00000551755 ATXN2-021 111464662-111486824 nonsense_mediated_decay
  ENST00000552323 ATXN2-022 111485109-111486814 retained_intron
  ENST00000608853 ATXN2-025 111452214-111599350 protein_coding
  ENST00000616825 ATXN2-202 111452215-111599676 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389153ENST00000389154ENST00000468920ENST00000482777ENST00000483311ENST00000492467ENST00000535949ENST00000542287ENST00000550844ENST00000552323ENST00000608853
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389153 N/A N/A N/A 2.538±0.00 N/A N/A 0.537±0.00 0.651±0.00 1.747±0.00 N/A N/A 4.575±0.00 N/A N/A
ENST00000389154 3.621±0.00 4.524±0.00 N/A 6.665±0.00 4.549±0.00 3.780±0.00 2.461±0.00 4.421±0.00 2.444±0.00 4.800±0.00 2.763±1.94 4.262±0.00 2.358±0.00 12.539±0.00
ENST00000468920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.358±0.00 N/A N/A N/A
ENST00000482777 N/A 1.977±0.00 N/A N/A 2.528±0.00 N/A N/A N/A N/A 1.855±0.00 N/A 3.390±1.62 N/A 7.677±0.00
ENST00000483311 N/A N/A 1.289±0.00 N/A N/A N/A 2.961±0.00 N/A 0.870±0.00 1.997±0.49 2.274±0.00 N/A N/A N/A
ENST00000492467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.403±0.00 N/A 11.881±0.00 N/A
ENST00000535949 4.420±0.00 3.680±0.00 1.442±0.00 6.690±0.00 3.248±0.00 3.204±0.00 2.292±1.79 3.921±0.00 2.064±0.00 5.737±0.00 4.796±0.00 4.308±2.57 2.855±1.75 8.531±2.50
ENST00000542287 1.903±0.00 N/A N/A 4.875±1.24 2.478±0.00 N/A N/A N/A 2.383±0.00 N/A 2.053±0.00 N/A N/A N/A
ENST00000550844 N/A N/A N/A N/A N/A 2.427±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552323 N/A N/A N/A N/A N/A N/A 7.327±0.00 10.825±0.00 N/A N/A N/A N/A N/A N/A
ENST00000608853 N/A N/A N/A N/A 2.167±0.00 N/A N/A N/A N/A N/A N/A N/A 1.404±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TJ CIL_0008TJ_0001 VISTA 12:110911282-111513646

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002091 IMP negative regulation of receptor internalization
GO:0003723 NAS RNA binding
GO:0005154 IPI epidermal growth factor receptor binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0005844 IDA polysome
GO:0006417 NAS regulation of translation
GO:0008022 IPI protein C-terminus binding
GO:0008219 IEA cell death
GO:0010494 IDA cytoplasmic stress granule
GO:0016020 IDA membrane
GO:0016070 NAS RNA metabolic process
GO:0021702 IEA cerebellar Purkinje cell differentiation
GO:0030529 IDA ribonucleoprotein complex
GO:0033962 IMP cytoplasmic mRNA processing body assembly
GO:0034063 IMP stress granule assembly
GO:0040015 IEA negative regulation of multicellular organism growth
GO:0044822 IDA poly(A) RNA binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048812 IEA neuron projection morphogenesis
GO:0048872 IEA homeostasis of number of cells
GO:0050658 NAS RNA transport
GO:0050905 IEA neuromuscular process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052897 atxn2 ataxin 2 protein_coding Danio_rerio
ENSMUSG00000042605 Atxn2 ataxin 2 protein_coding Mus_musculus

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