C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PEST containing nuclear protein pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000552501 PCNPP1-001 ENSG00000258359 9606 - 12:111669852-111670362 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000552501
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000552501 0.255±0.00 0.499±0.00 0.305±0.18 0.317±0.02 0.574±0.48 0.202±0.08 0.196±0.00 0.072±0.01 0.217±0.00 0.369±0.10 0.190±0.10 0.626±0.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114444 Pcnp-001 protein_coding Mus_musculus 0 551
ENSMUST00000056948 Gm7887-201 processed_pseudogene Mus_musculus 0 545
ENSMUST00000096021 Pcnp-003 protein_coding Mus_musculus 0 529
ENSMUST00000130818 Pcnp-002 nonsense_mediated_decay Mus_musculus 0 520
ENSMUST00000119981 Pcnp-008 protein_coding Mus_musculus 0 520
ENSMUST00000125040 Pcnp-007 nonsense_mediated_decay Mus_musculus 0 440
ENSMUST00000122253 Pcnp-005 protein_coding Mus_musculus 0 399

Loading