C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | valine--tRNA ligase, mitochondrial isoform 3 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000553245  |
VARSL-203 |
ENSG00000236178 |
9606 | + |
CHR_HSCHR6_MHC_COX_CTG1:30904196-30916173  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions |
|---|
| Gene is not located within a conserved region. |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000166 | IEA | nucleotide binding |
| GO:0002161 | IEA | aminoacyl-tRNA editing activity |
| GO:0004812 | IEA | aminoacyl-tRNA ligase activity |
| GO:0004832 | IEA | valine-tRNA ligase activity |
| GO:0005524 | IEA | ATP binding |
| GO:0006418 | IEA | tRNA aminoacylation for protein translation |
| GO:0006438 | IEA | valyl-tRNA aminoacylation |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000043674
|
Vars2-001 | protein_coding | Mus_musculus | 0 | 3164 |
|
ENSMUST00000165787
|
Vars2-003 | retained_intron | Mus_musculus | 0 | 2601 |
|
ENSMUST00000168922
|
Vars2-002 | nonsense_mediated_decay | Mus_musculus | 0 | 1681 |
|
ENSMUST00000164404
|
Vars2-004 | nonsense_mediated_decay | Mus_musculus | 0 | 1201 |
|
ENSMUST00000164978
|
Vars2-007 | retained_intron | Mus_musculus | 0 | 656 |
|
ENSMUST00000171536
|
Vars2-009 | retained_intron | Mus_musculus | 0 | 568 |
|
ENSMUST00000169093
|
Vars2-011 | nonsense_mediated_decay | Mus_musculus | 0 | 514 |
|
ENSMUST00000164295
|
Vars2-005 | retained_intron | Mus_musculus | 0 | 479 |
|
ENSMUST00000165144
|
Vars2-008 | nonsense_mediated_decay | Mus_musculus | 0 | 457 |
|
ENSMUST00000168885
|
Vars2-010 | retained_intron | Mus_musculus | 0 | 401 |
|
ENSMUST00000170701
|
Vars2-006 | retained_intron | Mus_musculus | 0 | 291 |
|
ENSMUST00000174129
|
Vars2-012 | retained_intron | Mus_musculus | 0 | 268 |
