C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein C (C1/C2)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000553300 HNRNPC-002 ENSG00000092199 9606 - 14:21210937-21269442 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000553300
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000553300 28.970±0.00 31.507±0.00 22.995±0.00 44.210±31.35 18.404±3.08 79.960±0.00 21.393±1.25 63.803±44.51 29.745±16.73 75.959±30.42 99.057±23.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00027N CIL_00027N_0001 CGP 14:21154865-21269494
CIL_00027O CIL_00027O_0001 CGP 14:21209136-21351301

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001649 IDA osteoblast differentiation
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005829 IDA cytosol
GO:0008266 IDA poly(U) RNA binding
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0031492 IDA nucleosomal DNA binding
GO:0038032 IEA termination of G-protein coupled receptor signaling pathway
GO:0042802 IPI identical protein binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0070935 IMP 3'-UTR-mediated mRNA stabilization
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122361 Gm12696-001 processed_pseudogene Mus_musculus 0 1123
ENSMUST00000164655 Hnrnpc-202 protein_coding Mus_musculus 0 959
ENSMUST00000111610 Hnrnpc-201 protein_coding Mus_musculus 0 959
ENSMUST00000117947 Gm12445-001 processed_pseudogene Mus_musculus 0 894
ENSMUST00000174284 Gm18889-001 processed_pseudogene Mus_musculus 0 739
ENSMUST00000190510 RP24-495G2.1-001 processed_pseudogene Mus_musculus 0 392

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