C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: APEX nuclease (multifunctional DNA repair enzyme) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000553681 APEX1-009 ENSG00000100823 9606 + 14:20455201-20457342 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000553681
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000553681 37.554±0.00 64.871±0.00 51.818±0.00 71.121±0.00 37.303±0.00 16.519±0.00 47.256±0.00 15.089±0.00 19.626±0.00 26.088±0.00 63.829±0.00 37.996±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Z3 CIL_0004Z3_0002 CGP 14:20446411-20457772
CIL_0001O8 CIL_0001O8_0001 CGP 14:20455191-20461612

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004518 IEA nuclease activity
GO:0005634 IDA nucleus
GO:0005813 IDA centrosome
GO:0006281 IEA DNA repair

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049411 Apex1-001 protein_coding Mus_musculus 0 852
ENSMUST00000136753 Apex1-004 protein_coding Mus_musculus 0 595
ENSMUST00000128395 Apex1-003 protein_coding Mus_musculus 0 472
ENSMUST00000160835 Tmem55b-001 protein_coding Mus_musculus 0 375

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