C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 55b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160835 Tmem55b-001 ENSMUSG00000035953 10090 - 14:50926070-50930849 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000160835
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000160835 33.407±9.31 14.635±3.79 17.923±8.78 31.781±20.07 25.726±3.15 12.140±3.00 7.905±2.36 13.334±0.77 18.862±9.93 13.023±2.95 5.027±1.05 19.298±7.97 18.928±10.68 16.432±2.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Z3 CIL_0004Z3_0003 CGP 14:50906478-50927139
CIL_0001O8 CIL_0001O8_0002 CGP 14:50924968-50930856
CIL_0001O9 CIL_0001O9_0002 CGP 14:50926070-50965237

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005764 IEA lysosome
GO:0005768 IEA endosome
GO:0008150 ND biological_process
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216714 APEX1-001 protein_coding Homo_sapiens 0 595
ENST00000250489 TMEM55B-001 protein_coding Homo_sapiens 0 1478
ENST00000398020 TMEM55B-003 protein_coding Homo_sapiens 0 1605
ENST00000398030 APEX1-008 protein_coding Homo_sapiens 0 595
ENST00000553555 APEX1-007 retained_intron Homo_sapiens 0 595
ENST00000553681 APEX1-009 protein_coding Homo_sapiens 0 375
ENST00000554028 TMEM55B-005 protein_coding Homo_sapiens 0 680
ENST00000554813 APEX1-010 processed_transcript Homo_sapiens 1.99965e-42 176
ENST00000555414 APEX1-002 protein_coding Homo_sapiens 0 595
ENST00000556054 APEX1-017 protein_coding Homo_sapiens 1e-21 108
ENST00000556093 TMEM55B-004 protein_coding Homo_sapiens 0 298
ENST00000557041 TMEM55B-002 retained_intron Homo_sapiens 0 713
ENST00000557054 APEX1-006 protein_coding Homo_sapiens 0 435
ENST00000557150 APEX1-021 protein_coding Homo_sapiens 1e-26 124
ENST00000557159 APEX1-005 retained_intron Homo_sapiens 0 595
ENST00000557365 APEX1-020 processed_transcript Homo_sapiens 0 340
ENST00000557592 APEX1-018 protein_coding Homo_sapiens 8e-37 158

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