C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NDRG family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554104 NDRG2-017 ENSG00000165795 9606 - 14:21016772-21022820 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonLungOvaryPlacentaENST00000554104
Transcript ID Bladder Colon Lung Ovary Placenta
ENST00000554104 7.971±0.00 5.898±0.00 3.933±0.00 3.551±0.00 4.320±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TH CIL_0004TH_0001 CGP 14:20999255-21070872
CIL_00027R CIL_00027R_0001 CGP 14:21016763-21070872

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005815 IDA microtubule organizing center

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004673 Ndrg2-201 protein_coding Mus_musculus 0 1543
ENSMUST00000111632 Ndrg2-202 protein_coding Mus_musculus 0 1541
ENSMUST00000080666 Ndrg4-002 protein_coding Mus_musculus 2.00386e-43 182
ENSMUST00000073139 Ndrg4-001 protein_coding Mus_musculus 2e-33 148
ENSMUST00000166358 Ndrg4-010 nonsense_mediated_decay Mus_musculus 2e-33 148
ENSMUST00000041318 Ndrg4-003 protein_coding Mus_musculus 2e-33 148
ENSMUST00000159851 Ndrg4-006 retained_intron Mus_musculus 6e-33 147
ENSMUST00000159632 Ndrg4-008 retained_intron Mus_musculus 8e-27 126
ENSMUST00000160915 Ndrg4-005 processed_transcript Mus_musculus 8e-27 126
ENSMUST00000162578 Ndrg4-007 processed_transcript Mus_musculus 5e-19 100

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