C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein C (C1/C2)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554383 HNRNPC-027 ENSG00000092199 9606 - 14:21211418-21269442 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLungENST00000554383
Transcript ID Bladder Brain Breast Colon Kidney Lung
ENST00000554383 20.329±0.00 31.913±0.00 52.266±0.00 17.288±0.00 51.585±0.00 44.890±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00027N CIL_00027N_0001 CGP 14:21154865-21269494
CIL_00027O CIL_00027O_0001 CGP 14:21209136-21351301

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0038032 IEA termination of G-protein coupled receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122361 Gm12696-001 processed_pseudogene Mus_musculus 0 1005
ENSMUST00000117947 Gm12445-001 processed_pseudogene Mus_musculus 0 791
ENSMUST00000174284 Gm18889-001 processed_pseudogene Mus_musculus 0 684
ENSMUST00000111610 Hnrnpc-201 protein_coding Mus_musculus 0 580
ENSMUST00000164655 Hnrnpc-202 protein_coding Mus_musculus 0 555
ENSMUST00000190510 RP24-495G2.1-001 processed_pseudogene Mus_musculus 0 329

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