C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine hydroxymethyltransferase 2 (mitochondrial)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000555116 SHMT2-010 ENSG00000182199 9606 + 12:57230368-57234763 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverMuscleENST00000555116
Transcript ID Brain Kidney Liver Muscle
ENST00000555116 0.703±0.00 8.048±0.00 22.331±0.00 7.235±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002KV CIL_0002KV_0002 CGP 12:57216795-57234935
CIL_0002KW CIL_0002KW_0002 CGP 12:57229327-57240715

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004372 IEA glycine hydroxymethyltransferase activity
GO:0006544 IEA glycine metabolic process
GO:0006563 IEA L-serine metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026470 Shmt2-201 protein_coding Mus_musculus 0 1092
ENSMUST00000118776 Gm15544-001 processed_pseudogene Mus_musculus 0 601

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