C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 15544
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118776 Gm15544-001 ENSMUSG00000081664 10090 + 7:80429210-80430740 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000118776
Transcript ID Adipose Adrenal Bladder Brain Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000118776 0.016±0.00 0.054±0.05 0.005±0.00 0.015±0.00 0.017±0.00 0.033±0.00 0.009±0.01 0.046±0.00 0.192±0.14 0.030±0.01 0.043±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0002 VISTA 7:80145068-80746500

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000328923 SHMT2-001 protein_coding Homo_sapiens 0 1013
ENST00000414700 SHMT2-005 protein_coding Homo_sapiens 0 1011
ENST00000449049 SHMT2-008 protein_coding Homo_sapiens 0 1011
ENST00000553474 SHMT2-009 protein_coding Homo_sapiens 0 1011
ENST00000553837 SHMT2-011 nonsense_mediated_decay Homo_sapiens 0 601
ENST00000553868 SHMT2-032 retained_intron Homo_sapiens 0 237
ENST00000553949 SHMT2-037 processed_transcript Homo_sapiens 0 198
ENST00000554310 SHMT2-023 protein_coding Homo_sapiens 0 420
ENST00000554467 SHMT2-002 retained_intron Homo_sapiens 0 285
ENST00000554600 SHMT2-034 processed_transcript Homo_sapiens 0 475
ENST00000554604 SHMT2-036 nonsense_mediated_decay Homo_sapiens 0 475
ENST00000554656 SHMT2-026 processed_transcript Homo_sapiens 0 473
ENST00000554975 SHMT2-028 protein_coding Homo_sapiens 0 540
ENST00000555116 SHMT2-010 nonsense_mediated_decay Homo_sapiens 0 601
ENST00000555213 SHMT2-031 retained_intron Homo_sapiens 0 237
ENST00000555563 SHMT2-035 nonsense_mediated_decay Homo_sapiens 0 340
ENST00000555634 SHMT2-019 protein_coding Homo_sapiens 0 773
ENST00000555774 SHMT2-012 nonsense_mediated_decay Homo_sapiens 0 601
ENST00000556689 SHMT2-033 protein_coding Homo_sapiens 0 475
ENST00000556825 SHMT2-004 nonsense_mediated_decay Homo_sapiens 0 774
ENST00000557269 SHMT2-020 nonsense_mediated_decay Homo_sapiens 0 237
ENST00000557348 SHMT2-006 nonsense_mediated_decay Homo_sapiens 0 774
ENST00000557427 SHMT2-025 protein_coding Homo_sapiens 0 414
ENST00000557433 SHMT2-013 nonsense_mediated_decay Homo_sapiens 0 994
ENST00000557487 SHMT2-015 protein_coding Homo_sapiens 0 979
ENST00000557529 SHMT2-030 protein_coding Homo_sapiens 0 593

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