C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NDRG family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000556147 NDRG2-013 ENSG00000165795 9606 - 14:21016773-21024964 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverOvaryENST00000556147
Transcript ID Colon Liver Ovary
ENST00000556147 2.357±0.00 1.873±0.00 1.405±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TH CIL_0004TH_0001 CGP 14:20999255-21070872
CIL_00027R CIL_00027R_0001 CGP 14:21016763-21070872

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001818 IEA negative regulation of cytokine production
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005813 IDA centrosome
GO:0005815 IDA microtubule organizing center
GO:0005829 NAS cytosol
GO:0007165 IEA signal transduction
GO:0010574 IEA regulation of vascular endothelial growth factor production
GO:0016055 IEA Wnt signaling pathway
GO:0021762 IEP substantia nigra development
GO:0030154 IEA cell differentiation
GO:0042995 IEA cell projection
GO:0048662 IEA negative regulation of smooth muscle cell proliferation
GO:0070062 IDA extracellular vesicular exosome
GO:0070373 IEA negative regulation of ERK1 and ERK2 cascade
GO:0090361 IEA regulation of platelet-derived growth factor production

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004673 Ndrg2-201 protein_coding Mus_musculus 0 1698
ENSMUST00000111632 Ndrg2-202 protein_coding Mus_musculus 0 1541
ENSMUST00000080666 Ndrg4-002 protein_coding Mus_musculus 2.00386e-43 182
ENSMUST00000073139 Ndrg4-001 protein_coding Mus_musculus 2e-33 148
ENSMUST00000166358 Ndrg4-010 nonsense_mediated_decay Mus_musculus 2e-33 148
ENSMUST00000041318 Ndrg4-003 protein_coding Mus_musculus 2e-33 148
ENSMUST00000159851 Ndrg4-006 retained_intron Mus_musculus 8e-33 147
ENSMUST00000159632 Ndrg4-008 retained_intron Mus_musculus 1e-26 126
ENSMUST00000160915 Ndrg4-005 processed_transcript Mus_musculus 1e-26 126
ENSMUST00000162578 Ndrg4-007 processed_transcript Mus_musculus 7e-19 100

Loading