C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: estrogen receptor 2 (ER beta)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000556275 ESR2-004 ENSG00000140009 9606 - 14:64084232-64294410 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastKidneyLiverLungMuscleENST00000556275
Transcript ID Adrenal Bladder Breast Kidney Liver Lung Muscle
ENST00000556275 0.137±0.00 0.306±0.00 0.449±0.00 0.288±0.00 0.250±0.00 0.103±0.00 0.152±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004WO CIL_0004WO_0001 CGP 14:63684214-64226433
CIL_00010O CIL_00010O_0001 CGP 14:63852983-64338112

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005496 IEA steroid binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076634 Esr2-201 protein_coding Mus_musculus 0 1399
ENSMUST00000110421 Esr2-001 protein_coding Mus_musculus 0 1397
ENSMUST00000101291 Esr2-002 protein_coding Mus_musculus 0 1123
ENSMUST00000133564 Esr2-003 nonsense_mediated_decay Mus_musculus 0 935

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