C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004WO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000126821-ENSG00000054654 CGP 9606 14:63684214-64226433
GeneTranscriptPositionBiotype
ENSG00000126821 (SGPP1)
sphingosine-1-phosphate phosphatase 1 		ENST00000247225 (SGPP1-001) 63684214-63728039 protein_coding
ENSG00000258411 (RP11-804M7.2)
 ENST00000554348 (RP11-804M7.2-001) 63762013-63762149 processed_pseudogene
ENSG00000258778 (RP11-804M7.1)
 ENST00000557650 (RP11-804M7.1-001) 63734697-63735923 processed_pseudogene
ENSG00000270912 (RPS28P1)
ribosomal protein S28 pseudogene 1 		ENST00000604589 (RPS28P1-001) 63808546-63808732 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0004WO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021054-ENSMUSG00000063450 CGP 10090 12:75714248-76110926
GeneTranscriptPositionBiotype
ENSMUSG00000021054 (Sgpp1)
sphingosine-1-phosphate phosphatase 1 		ENSMUST00000021450 (Sgpp1-201) 75714248-75735729 protein_coding
ENSMUSG00000063450 (Syne2)
spectrin repeat containing, nuclear envelope 2 		ENSMUST00000044217 (Syne2-201) 75818318-76110900 protein_coding
ENSMUST00000085280 (Syne2-006) 76031614-76110920 protein_coding
ENSMUST00000124685 (Syne2-005) 75909218-75913887 retained_intron
ENSMUST00000126903 (Syne2-013) 76081939-76097981 nonsense_mediated_decay
ENSMUST00000131480 (Syne2-014) 76072016-76094436 protein_coding
ENSMUST00000132161 (Syne2-008) 76087760-76110926 nonsense_mediated_decay
ENSMUST00000133623 (Syne2-002) 75818323-75891049 retained_intron
ENSMUST00000139204 (Syne2-007) 76048578-76110900 protein_coding
ENSMUST00000142864 (Syne2-009) 75818134-75880506 protein_coding
ENSMUST00000143031 (Syne2-001) 75818318-76110926 protein_coding
ENSMUST00000148324 (Syne2-010) 75852730-75880328 protein_coding
ENSMUST00000148825 (Syne2-016) 76022300-76027815 protein_coding
ENSMUST00000150317 (Syne2-003) 75818329-75908877 protein_coding
ENSMUST00000151286 (Syne2-011) 76100901-76105992 retained_intron
ENSMUST00000154509 (Syne2-012) 76081656-76095046 protein_coding
ENSMUST00000154762 (Syne2-015) 76059674-76066516 retained_intron
ENSMUST00000157033 (Syne2-004) 75818350-75905903 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004WO_0001ENSG00000126821ENST00000247225ENSG00000258411ENST00000554348ENSG00000258778ENST00000557650ENSG00000270912ENST00000604589CIL_0004WO_0002ENSMUSG00000021054ENSMUST00000021450ENSMUSG00000063450ENSMUST00000044217ENSMUST00000085280ENSMUST00000124685ENSMUST00000126903ENSMUST00000131480ENSMUST00000132161ENSMUST00000133623ENSMUST00000139204ENSMUST00000142864ENSMUST00000143031ENSMUST00000148324ENSMUST00000148825ENSMUST00000150317ENSMUST00000151286ENSMUST00000154509ENSMUST00000154762ENSMUST00000157033
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004WO_0001ENSG00000126821ENST00000247225ENSG00000258411ENST00000554348ENSG00000258778ENST00000557650ENSG00000270912ENST00000604589CIL_0004WO_0002ENSMUSG00000021054ENSMUST00000021450ENSMUSG00000063450ENSMUST00000044217ENSMUST00000085280ENSMUST00000126903ENSMUST00000132161ENSMUST00000139204ENSMUST00000143031
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000126821 ENST00000247225 4.445±0.00 4.761±0.00 3.397±0.00 6.352±1.88 3.610±0.76 2.870±0.33 1.233±0.66 9.250±6.14 4.762±2.91 4.146±0.16 0.997±0.13 3.702±0.70 9.503±2.10 4.788±1.54
ENSG00000258411 ENST00000554348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.842±0.00 0.238±0.14
ENSG00000258778 ENST00000557650 0.038±0.00 N/A 0.034±0.00 0.077±0.00 0.105±0.00 0.018±0.00 0.040±0.00 0.010±0.00 0.086±0.00 0.126±0.00 0.183±0.00 0.031±0.01 0.023±0.00 0.137±0.02
ENSG00000270912 ENST00000604589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.224±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021054 ENSMUST00000021450 15.589±7.25 160.493±21.64 12.201±0.75 4.731±0.65 29.429±9.69 22.902±2.88 10.602±0.63 51.117±3.29 19.003±9.00 27.174±1.57 4.995±0.40 41.021±15.98 6.407±2.30 11.768±4.68
ENSMUSG00000063450 ENSMUST00000044217 N/A N/A N/A N/A 0.634±0.00 N/A N/A N/A 0.191±0.01 N/A 0.214±0.02 N/A N/A N/A
ENSMUST00000085280 1.522±0.24 N/A 4.408±0.03 1.972±1.00 N/A N/A 0.916±0.25 N/A 0.212±0.06 N/A 0.897±0.15 50.616±26.35 2.896±2.06 7.049±0.00
ENSMUST00000124685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126903 N/A N/A N/A 9.127±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 23.157±6.22 N/A
ENSMUST00000131480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132161 10.418±0.57 8.070±0.53 8.515±1.21 8.587±3.97 7.092±2.18 14.427±1.16 5.624±0.41 10.324±1.28 1.261±0.49 23.220±1.98 1.409±0.46 48.999±6.72 3.383±0.87 4.316±0.60
ENSMUST00000133623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139204 3.780±0.89 2.811±0.66 5.055±0.85 5.386±1.71 2.499±0.86 8.411±1.14 1.190±0.17 8.604±2.07 0.882±0.44 8.242±0.99 N/A 28.676±6.66 1.524±0.10 5.287±0.43
ENSMUST00000142864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143031 1.344±0.46 0.574±0.09 1.153±0.24 0.869±0.49 0.696±0.12 1.304±0.19 0.713±0.09 2.189±0.38 0.228±0.11 2.512±0.31 0.282±0.06 8.438±3.58 0.799±0.33 0.886±0.22
ENSMUST00000148324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154762 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000157033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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