C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine hydroxymethyltransferase 2 (mitochondrial)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000556825 SHMT2-004 ENSG00000182199 9606 + 12:57229573-57234935 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartOvaryENST00000556825
Transcript ID Heart Ovary
ENST00000556825 0.519±0.00 16.444±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002KV CIL_0002KV_0002 CGP 12:57216795-57234935
CIL_0002KW CIL_0002KW_0002 CGP 12:57229327-57240715

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004372 IEA glycine hydroxymethyltransferase activity
GO:0005739 IDA mitochondrion
GO:0006544 IEA glycine metabolic process
GO:0006563 IEA L-serine metabolic process
GO:0015630 IDA microtubule cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026470 Shmt2-201 protein_coding Mus_musculus 0 1461
ENSMUST00000118776 Gm15544-001 processed_pseudogene Mus_musculus 0 774
ENSMUST00000035735 Ndufa4l2-201 protein_coding Mus_musculus 0.000003 58

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