C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000556877 RP11-545M17.3-001 ENSG00000258591 9606 + 14:39108342-39108707 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainKidneyLungOvaryPlacentaTestisENST00000556877
Transcript ID Adrenal Brain Kidney Lung Ovary Placenta Testis
ENST00000556877 0.162±0.00 1.192±0.76 0.476±0.40 0.905±0.00 0.114±0.00 0.180±0.00 0.206±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VV CIL_0003VV_0001 CGP 14:38254103-39109646
CIL_0003VW CIL_0003VW_0001 CGP 14:39031919-39136973

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 444
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 444
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 0 444
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 444
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 422
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000119740 Gm12728-001 translated_processed_pseudogene Mus_musculus 0 403
ENSMUST00000099961 Gm6043-201 processed_pseudogene Mus_musculus 0 394
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000119162 Gm15621-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000119751 Gm11469-001 processed_pseudogene Mus_musculus 0 324
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 315

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