C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine hydroxymethyltransferase 2 (mitochondrial)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557433 SHMT2-013 ENSG00000182199 9606 + 12:57229759-57234726 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000557433
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000557433 16.599±0.00 17.406±0.00 2.480±0.00 14.573±0.00 13.023±0.00 5.423±0.00 21.449±0.00 36.159±0.00 9.314±0.00 12.049±0.00 23.897±14.48 6.596±4.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002KV CIL_0002KV_0002 CGP 12:57216795-57234935
CIL_0002KW CIL_0002KW_0002 CGP 12:57229327-57240715

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004372 IEA glycine hydroxymethyltransferase activity
GO:0005739 IDA mitochondrion
GO:0006544 IEA glycine metabolic process
GO:0006563 IEA L-serine metabolic process
GO:0015630 IDA microtubule cytoskeleton
GO:0030170 IEA pyridoxal phosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026470 Shmt2-201 protein_coding Mus_musculus 0 1799
ENSMUST00000118776 Gm15544-001 processed_pseudogene Mus_musculus 0 994

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