C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine hydroxymethyltransferase 2 (mitochondrial)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557487 SHMT2-015 ENSG00000182199 9606 + 12:57229711-57234726 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENST00000557487
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENST00000557487 1.805±0.00 1.448±0.00 1.095±0.00 1.329±0.00 6.645±0.00 30.209±0.00 0.640±0.00 11.063±0.00 16.483±11.03 16.628±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002KV CIL_0002KV_0002 CGP 12:57216795-57234935
CIL_0002KW CIL_0002KW_0002 CGP 12:57229327-57240715

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0004372 IDA:IEA glycine hydroxymethyltransferase activity
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0005759 IDA mitochondrial matrix
GO:0006544 IEA glycine metabolic process
GO:0006563 IEA L-serine metabolic process
GO:0006730 IDA one-carbon metabolic process
GO:0015630 IDA microtubule cytoskeleton
GO:0030170 IEA pyridoxal phosphate binding
GO:0035999 IEA tetrahydrofolate interconversion
GO:0042645 IDA mitochondrial nucleoid
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026470 Shmt2-201 protein_coding Mus_musculus 0 1053
ENSMUST00000118776 Gm15544-001 processed_pseudogene Mus_musculus 0 979

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