C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine hydroxymethyltransferase 2 (mitochondrial)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557529 SHMT2-030 ENSG00000182199 9606 + 12:57232461-57234694 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverMuscleENST00000557529
Transcript ID Brain Kidney Liver Muscle
ENST00000557529 0.998±0.00 6.260±0.00 0.841±0.00 1.510±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002KV CIL_0002KV_0002 CGP 12:57216795-57234935
CIL_0002KW CIL_0002KW_0002 CGP 12:57229327-57240715

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004372 IEA glycine hydroxymethyltransferase activity
GO:0006544 IEA glycine metabolic process
GO:0006563 IEA L-serine metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026470 Shmt2-201 protein_coding Mus_musculus 0 896
ENSMUST00000118776 Gm15544-001 processed_pseudogene Mus_musculus 0 593

Loading