C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD51 recombinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557850 RAD51-003 ENSG00000051180 9606 + 15:40695172-40731590 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLungOvaryPlacentaTestisENST00000557850
Transcript ID Brain Kidney Lung Ovary Placenta Testis
ENST00000557850 0.138±0.00 0.247±0.00 0.348±0.00 2.352±0.00 2.261±0.53 5.139±0.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IO CIL_0005IO_0002 CGP 15:40694774-40755851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000228 IDA nuclear chromosome
GO:0000724 TAS double-strand break repair via homologous recombination
GO:0000730 TAS DNA recombinase assembly
GO:0000793 ISS condensed chromosome
GO:0000794 ISS condensed nuclear chromosome
GO:0003677 IEA DNA binding
GO:0003684 IEA damaged DNA binding
GO:0003690 IDA double-stranded DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005524 IDA:IEA ATP binding
GO:0005634 ISS nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005856 IEA cytoskeleton
GO:0006200 IEA ATP catabolic process
GO:0006259 IEA DNA metabolic process
GO:0006268 IDA DNA unwinding involved in DNA replication
GO:0006281 TAS DNA repair
GO:0006302 TAS double-strand break repair
GO:0006310 TAS DNA recombination
GO:0006312 TAS mitotic recombination
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0007126 ISS meiotic nuclear division
GO:0007131 TAS reciprocal meiotic recombination
GO:0008022 IPI protein C-terminus binding
GO:0008094 IEA DNA-dependent ATPase activity
GO:0010569 IDA regulation of double-strand break repair via homologous recombination
GO:0016605 IDA PML body
GO:0042802 IPI identical protein binding
GO:0043142 IDA single-stranded DNA-dependent ATPase activity
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051106 IDA positive regulation of DNA ligation
GO:0051260 IPI protein homooligomerization
GO:0070182 IPI DNA polymerase binding
GO:0071479 IDA cellular response to ionizing radiation
GO:0072757 IDA cellular response to camptothecin

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028795 Rad51-001 protein_coding Mus_musculus 0 684
ENSMUST00000151406 Rad51-008 protein_coding Mus_musculus 0 492
ENSMUST00000152327 Rad51-003 nonsense_mediated_decay Mus_musculus 0 339
ENSMUST00000110828 Rad51-004 retained_intron Mus_musculus 0 318
ENSMUST00000140939 Rad51-005 protein_coding Mus_musculus 0 318
ENSMUST00000154683 Rad51-007 retained_intron Mus_musculus 0 315
ENSMUST00000143934 Rad51-002 retained_intron Mus_musculus 0 195
ENSMUST00000141389 Rad51-006 retained_intron Mus_musculus 0.00000000000003 84

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