C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, alpha 5 (neuronal)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559576 CHRNA5-004 ENSG00000169684 9606 + 15:78590362-78593701 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLungMuscleOvaryPlacentaENST00000559576
Transcript ID Breast Lung Muscle Ovary Placenta
ENST00000559576 2.135±0.00 0.229±0.00 0.261±0.00 0.442±0.18 0.299±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TW CIL_0003TW_0001 CGP 15:78540405-78595269
CIL_0003TT CIL_0003TT_0001 CGP 15:78565520-78621295

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006811 IEA ion transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000093844 Chrna5-201 protein_coding Mus_musculus 0 195

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