C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003TT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169684-ENSG00000080644 CGP 9606 15:78565520-78621295
GeneTranscriptPositionBiotype
ENSG00000080644 (CHRNA3)
cholinergic receptor, nicotinic, alpha 3 (neuronal) 		ENST00000326828 (CHRNA3-001) 78595305-78621179 protein_coding
ENST00000348639 (CHRNA3-002) 78593052-78621295 protein_coding
ENST00000558903 (CHRNA3-008) 78601776-78607524 processed_transcript
ENST00000559002 (CHRNA3-004) 78593052-78596732 processed_transcript
ENST00000559080 (CHRNA3-007) 78618630-78619278 protein_coding
ENST00000559658 (CHRNA3-003) 78593052-78620863 nonsense_mediated_decay
ENST00000559941 (CHRNA3-006) 78618849-78620261 processed_transcript
ENST00000561128 (CHRNA3-005) 78618380-78620789 retained_intron
ENSG00000169684 (CHRNA5)
cholinergic receptor, nicotinic, alpha 5 (neuronal) 		ENST00000299565 (CHRNA5-001) 78565520-78595269 protein_coding
ENST00000394802 (CHRNA5-002) 78580890-78593274 protein_coding
ENST00000559554 (CHRNA5-003) 78565571-78593535 protein_coding
ENST00000559576 (CHRNA5-004) 78590362-78593701 protein_coding
ENSG00000261762 (RP11-650L12.2)
 ENST00000567141 (RP11-650L12.2-001) 78589123-78591276 antisense
ENSG00000279421 (RP11-335K5.3)
 ENST00000624172 (RP11-335K5.3-001) 78599892-78600013 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0003TT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035594-ENSMUSG00000032303 CGP 10090 9:54980880-55026559
GeneTranscriptPositionBiotype
ENSMUSG00000032303 (Chrna3)
cholinergic receptor, nicotinic, alpha polypeptide 3 		ENSMUST00000034851 (Chrna3-201) 55011343-55026559 protein_coding
ENSMUSG00000035594 (Chrna5)
cholinergic receptor, nicotinic, alpha polypeptide 5 		ENSMUST00000093844 (Chrna5-201) 54980880-55007779 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003TT_0001ENSG00000080644ENST00000326828ENST00000348639ENST00000558903ENST00000559002ENST00000559080ENST00000559658ENST00000559941ENST00000561128ENSG00000169684ENST00000299565ENST00000394802ENST00000559554ENST00000559576ENSG00000261762ENST00000567141ENSG00000279421ENST00000624172CIL_0003TT_0002ENSMUSG00000032303ENSMUST00000034851ENSMUSG00000035594ENSMUST00000093844
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003TT_0001ENSG00000080644ENST00000326828ENST00000348639ENST00000558903ENST00000559658ENST00000561128ENSG00000169684ENST00000299565ENST00000394802ENST00000559554ENST00000559576ENSG00000261762ENST00000567141ENSG00000279421ENST00000624172CIL_0003TT_0002ENSMUSG00000032303ENSMUST00000034851ENSMUSG00000035594ENSMUST00000093844
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000080644 ENST00000326828 N/A 1.112±0.00 N/A N/A 0.566±0.00 1.381±0.99 N/A N/A 0.304±0.00 N/A N/A N/A 0.099±0.00 0.357±0.00
ENST00000348639 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00 N/A N/A N/A N/A
ENST00000558903 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.495±0.00 N/A N/A N/A N/A
ENST00000559002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559658 N/A N/A N/A N/A N/A 0.376±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561128 N/A N/A 0.914±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169684 ENST00000299565 N/A N/A N/A 0.050±0.00 0.104±0.00 N/A 0.027±0.00 0.109±0.00 0.069±0.05 N/A N/A 0.028±0.00 0.052±0.00 N/A
ENST00000394802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.191±0.00 N/A N/A
ENST00000559554 N/A N/A N/A 0.444±0.00 N/A N/A 0.206±0.14 N/A 0.441±0.00 N/A 0.201±0.00 0.763±0.71 0.737±0.75 2.596±1.53
ENST00000559576 N/A N/A N/A N/A 2.135±0.00 N/A N/A N/A N/A 0.229±0.00 0.261±0.00 0.442±0.18 0.299±0.08 N/A
ENSG00000261762 ENST00000567141 0.096±0.00 0.448±0.00 N/A 0.227±0.00 0.445±0.22 0.670±0.43 0.199±0.17 0.076±0.00 0.078±0.07 N/A 0.201±0.00 0.282±0.35 0.534±0.47 1.501±0.80
ENSG00000279421 ENST00000624172 N/A 0.740±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.737±0.00 N/A 0.496±0.16
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032303 ENSMUST00000034851 0.014±0.00 11.111±3.77 0.167±0.02 3.372±2.40 0.026±0.01 2.758±0.27 0.282±0.08 0.576±0.32 0.010±0.01 0.068±0.03 N/A 0.051±0.04 0.020±0.02 0.048±0.03
ENSMUSG00000035594 ENSMUST00000093844 0.044±0.04 0.102±0.04 0.019±0.01 0.332±0.02 0.126±0.04 0.081±0.02 0.027±0.01 0.033±0.00 0.011±0.01 N/A 0.016±0.00 0.012±0.00 0.111±0.06 2.129±0.66

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