C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003TW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000041357-ENSG00000169684 CGP 9606 15:78540405-78595269
GeneTranscriptPositionBiotype
ENSG00000041357 (PSMA4)
proteasome (prosome, macropain) subunit, alpha type, 4 		ENST00000044462 (PSMA4-001) 78540413-78552419 protein_coding
ENST00000413382 (PSMA4-004) 78540427-78549204 protein_coding
ENST00000557929 (PSMA4-005) 78540467-78546610 processed_transcript
ENST00000558094 (PSMA4-021) 78544645-78548996 protein_coding
ENST00000558281 (PSMA4-019) 78540478-78548970 protein_coding
ENST00000558341 (PSMA4-017) 78540814-78549176 protein_coding
ENST00000558635 (PSMA4-008) 78540459-78542559 retained_intron
ENST00000558639 (PSMA4-010) 78540444-78544932 retained_intron
ENST00000559082 (PSMA4-006) 78540421-78549186 protein_coding
ENST00000559146 (PSMA4-018) 78540440-78546696 protein_coding
ENST00000559154 (PSMA4-020) 78544576-78546698 protein_coding
ENST00000559365 (PSMA4-015) 78540735-78548820 protein_coding
ENST00000559437 (PSMA4-016) 78540847-78546696 protein_coding
ENST00000559906 (PSMA4-013) 78543818-78545677 processed_transcript
ENST00000559934 (PSMA4-002) 78540444-78548906 retained_intron
ENST00000559948 (PSMA4-014) 78540427-78546684 protein_coding
ENST00000560033 (PSMA4-007) 78540427-78542683 retained_intron
ENST00000560099 (PSMA4-003) 78540461-78549204 retained_intron
ENST00000560217 (PSMA4-009) 78540405-78549037 protein_coding
ENST00000560737 (PSMA4-012) 78541690-78548868 protein_coding
ENST00000560842 (PSMA4-011) 78541556-78542375 retained_intron
ENSG00000080644 (CHRNA3)
cholinergic receptor, nicotinic, alpha 3 (neuronal) 		ENST00000326828 (CHRNA3-001) 78595305-78621179 protein_coding
ENST00000348639 (CHRNA3-002) 78593052-78621295 protein_coding
ENST00000558903 (CHRNA3-008) 78601776-78607524 processed_transcript
ENST00000559002 (CHRNA3-004) 78593052-78596732 processed_transcript
ENST00000559080 (CHRNA3-007) 78618630-78619278 protein_coding
ENST00000559658 (CHRNA3-003) 78593052-78620863 nonsense_mediated_decay
ENST00000559941 (CHRNA3-006) 78618849-78620261 processed_transcript
ENST00000561128 (CHRNA3-005) 78618380-78620789 retained_intron
ENSG00000169684 (CHRNA5)
cholinergic receptor, nicotinic, alpha 5 (neuronal) 		ENST00000299565 (CHRNA5-001) 78565520-78595269 protein_coding
ENST00000394802 (CHRNA5-002) 78580890-78593274 protein_coding
ENST00000559554 (CHRNA5-003) 78565571-78593535 protein_coding
ENST00000559576 (CHRNA5-004) 78590362-78593701 protein_coding
ENSG00000261762 (RP11-650L12.2)
 ENST00000567141 (RP11-650L12.2-001) 78589123-78591276 antisense
CIL_0003TW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032301-ENSMUSG00000035594 CGP 10090 9:54950790-55007779
GeneTranscriptPositionBiotype
ENSMUSG00000032301 (Psma4)
proteasome (prosome, macropain) subunit, alpha type 4 		ENSMUST00000034848 (Psma4-001) 54950790-54958030 protein_coding
ENSMUST00000163960 (Psma4-007) 54950815-54952806 processed_transcript
ENSMUST00000164679 (Psma4-005) 54950890-54953426 retained_intron
ENSMUST00000169008 (Psma4-006) 54950805-54955032 retained_intron
ENSMUST00000171578 (Psma4-003) 54950798-54956386 retained_intron
ENSMUST00000171900 (Psma4-004) 54951104-54956299 protein_coding
ENSMUST00000172407 (Psma4-002) 54950815-54956933 protein_coding
ENSMUSG00000035594 (Chrna5)
cholinergic receptor, nicotinic, alpha polypeptide 5 		ENSMUST00000093844 (Chrna5-201) 54980880-55007779 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003TW_0001ENSG00000041357ENST00000044462ENST00000413382ENST00000557929ENST00000558281ENST00000558341ENST00000559082ENST00000559146ENST00000559934ENST00000559948ENST00000560217ENST00000560737ENSG00000080644ENST00000326828ENST00000348639ENST00000558903ENST00000559658ENST00000561128ENSG00000169684ENST00000299565ENST00000394802ENST00000559554ENST00000559576ENSG00000261762ENST00000567141CIL_0003TW_0002ENSMUSG00000032301ENSMUST00000034848ENSMUST00000169008ENSMUST00000171578ENSMUST00000171900ENSMUST00000172407ENSMUSG00000035594ENSMUST00000093844
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000041357 ENST00000044462 N/A N/A N/A N/A N/A N/A 0.834±0.26 N/A N/A N/A N/A N/A N/A N/A
ENST00000413382 28.161±0.00 42.355±0.00 0.959±0.00 16.964±10.72 41.437±0.00 23.506±21.07 3.883±2.73 15.067±11.65 19.628±0.00 10.214±3.72 N/A 24.948±15.78 8.987±0.70 72.021±0.00
ENST00000557929 N/A N/A N/A 7.839±0.00 8.231±0.00 8.003±0.00 4.146±0.00 N/A N/A 15.080±0.00 N/A 17.143±7.15 11.844±0.00 N/A
ENST00000558094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558281 10.195±0.00 17.692±0.00 3.139±0.00 9.063±4.19 N/A 18.489±0.00 9.094±0.00 10.742±3.95 N/A N/A 9.015±0.00 6.896±0.00 N/A N/A
ENST00000558341 9.179±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.116±0.00 N/A
ENST00000558635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559082 6.511±0.00 25.491±0.00 1.667±0.00 2.257±0.00 16.474±8.30 2.869±0.00 8.483±7.14 26.376±0.00 15.934±12.04 26.657±0.00 9.800±7.44 34.837±23.22 29.298±5.43 47.460±12.01
ENST00000559146 N/A N/A 2.381±0.00 7.488±0.00 9.917±0.00 13.494±0.00 5.622±0.00 20.143±0.00 15.781±0.00 7.455±0.00 N/A 18.217±0.00 N/A N/A
ENST00000559154 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559365 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559934 N/A N/A 0.533±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559948 13.215±0.00 N/A N/A 21.627±0.00 N/A 24.698±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560217 N/A N/A N/A N/A N/A 2.836±0.00 6.304±0.00 7.129±0.00 8.123±0.00 13.566±0.00 7.413±4.11 29.982±0.00 30.429±0.00 21.631±0.00
ENST00000560737 N/A N/A N/A N/A N/A N/A 3.363±0.00 N/A N/A N/A 9.913±0.00 N/A N/A N/A
ENST00000560842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000080644 ENST00000326828 N/A 1.112±0.00 N/A N/A 0.566±0.00 1.381±0.99 N/A N/A 0.304±0.00 N/A N/A N/A 0.099±0.00 0.357±0.00
ENST00000348639 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00 N/A N/A N/A N/A
ENST00000558903 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.495±0.00 N/A N/A N/A N/A
ENST00000559002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559658 N/A N/A N/A N/A N/A 0.376±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561128 N/A N/A 0.914±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169684 ENST00000299565 N/A N/A N/A 0.050±0.00 0.104±0.00 N/A 0.027±0.00 0.109±0.00 0.069±0.05 N/A N/A 0.028±0.00 0.052±0.00 N/A
ENST00000394802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.191±0.00 N/A N/A
ENST00000559554 N/A N/A N/A 0.444±0.00 N/A N/A 0.206±0.14 N/A 0.441±0.00 N/A 0.201±0.00 0.763±0.71 0.737±0.75 2.596±1.53
ENST00000559576 N/A N/A N/A N/A 2.135±0.00 N/A N/A N/A N/A 0.229±0.00 0.261±0.00 0.442±0.18 0.299±0.08 N/A
ENSG00000261762 ENST00000567141 0.096±0.00 0.448±0.00 N/A 0.227±0.00 0.445±0.22 0.670±0.43 0.199±0.17 0.076±0.00 0.078±0.07 N/A 0.201±0.00 0.282±0.35 0.534±0.47 1.501±0.80
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032301 ENSMUST00000034848 37.508±2.94 12.087±4.30 65.517±9.14 74.478±13.09 32.496±11.78 19.396±2.91 19.127±0.44 46.060±5.86 63.777±21.46 19.293±3.10 52.594±6.97 47.121±46.74 121.721±61.90 51.282±55.90
ENSMUST00000163960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169008 N/A 7.950±0.44 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.363±0.00 N/A N/A
ENSMUST00000171578 N/A 6.932±2.42 N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.349±0.50 N/A N/A
ENSMUST00000171900 N/A 4.245±1.11 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.011±1.29
ENSMUST00000172407 20.369±2.26 6.855±1.27 N/A N/A 30.315±15.16 9.755±1.70 37.160±2.97 24.156±2.02 21.146±3.31 14.966±3.18 13.629±0.30 17.743±7.17 N/A 11.303±2.59
ENSMUSG00000035594 ENSMUST00000093844 0.044±0.04 0.102±0.04 0.019±0.01 0.332±0.02 0.126±0.04 0.081±0.02 0.027±0.01 0.033±0.00 0.011±0.01 N/A 0.016±0.00 0.012±0.00 0.111±0.06 2.129±0.66

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