C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | tropomyosin 1 (alpha) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000559831  |
TPM1-029 |
ENSG00000140416 |
9606 | + |
15:63044141-63062598  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_000502 | CIL_000502_0002 | CGP | 15:62390526-63071915 |
| CIL_00094O | CIL_00094O_0001 | VISTA | 15:62748846-63351985 |
| CIL_00098V | CIL_00098V_0001 | VISTA | 15:62790346-63394142 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000050905
|
Tpm1-004 | protein_coding | Mus_musculus | 0 | 649 |
|
ENSMUST00000113697
|
Tpm1-006 | protein_coding | Mus_musculus | 0 | 649 |
|
ENSMUST00000113684
|
Tpm1-020 | protein_coding | Mus_musculus | 0 | 632 |
|
ENSMUST00000113689
|
Tpm1-021 | protein_coding | Mus_musculus | 0 | 632 |
|
ENSMUST00000113701
|
Tpm1-010 | protein_coding | Mus_musculus | 0 | 632 |
|
ENSMUST00000113696
|
Tpm1-015 | protein_coding | Mus_musculus | 0 | 632 |
|
ENSMUST00000030185
|
Tpm1-002 | protein_coding | Mus_musculus | 0 | 531 |
|
ENSMUST00000113687
|
Tpm1-012 | protein_coding | Mus_musculus | 0 | 531 |
|
ENSMUST00000113685
|
Tpm1-003 | protein_coding | Mus_musculus | 0 | 531 |
|
ENSMUST00000113693
|
Tpm1-011 | protein_coding | Mus_musculus | 0 | 531 |
|
ENSMUST00000034928
|
Tpm1-008 | protein_coding | Mus_musculus | 0 | 531 |
|
ENSMUST00000113707
|
Tpm1-001 | protein_coding | Mus_musculus | 0 | 531 |
|
ENSMUST00000129466
|
Tpm1-019 | retained_intron | Mus_musculus | 0 | 520 |
|
ENSMUST00000113686
|
Tpm1-014 | protein_coding | Mus_musculus | 0 | 514 |
|
ENSMUST00000113690
|
Tpm1-013 | protein_coding | Mus_musculus | 0 | 514 |
|
ENSMUST00000113695
|
Tpm1-016 | protein_coding | Mus_musculus | 0 | 514 |
|
ENSMUST00000113705
|
Tpm1-007 | protein_coding | Mus_musculus | 0 | 514 |
|
ENSMUST00000139046
|
Tpm1-017 | nonsense_mediated_decay | Mus_musculus | 0 | 429 |
|
ENSMUST00000131279
|
Tpm1-018 | processed_transcript | Mus_musculus | 0 | 398 |
|
ENSDART00000039657
|
tpma-201 | protein_coding | Danio_rerio | 0 | 333 |
|
ENSDART00000054763
|
tpma-202 | protein_coding | Danio_rerio | 0 | 324 |
|
ENSMUST00000129733
|
Tpm1-009 | nonsense_mediated_decay | Mus_musculus | 0 | 263 |
|
ENSMUST00000156899
|
Tpm1-005 | processed_transcript | Mus_musculus | 0.0000002 | 60 |
