C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | tropomyosin 1, alpha | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000139046  |
Tpm1-017 |
ENSMUSG00000032366 |
10090 | - |
9:67022622-67043778  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00098V | CIL_00098V_0002 | VISTA | 9:66700483-67304558 |
| CIL_00094O | CIL_00094O_0002 | VISTA | 9:66740666-67343521 |
| CIL_0004OW | CIL_0004OW_0002 | CGP | 9:66955393-67049406 |
| CIL_0005H2 | CIL_0005H2_0002 | CGP | 9:67022590-67559703 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0001701 | IMP | in utero embryonic development |
| GO:0005200 | TAS | structural constituent of cytoskeleton |
| GO:0005737 | IDA | cytoplasm |
| GO:0005862 | TAS | muscle thin filament tropomyosin |
| GO:0030016 | IDA | myofibril |
| GO:0031941 | IDA | filamentous actin |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSDART00000131098
|
TPM1-201 | protein_coding | Danio_rerio | 0 | 309 |
|
ENSDART00000121680
|
TPM1-202 | protein_coding | Danio_rerio | 0 | 287 |
|
ENSDART00000014851
|
TPM1-203 | protein_coding | Danio_rerio | 0 | 285 |
|
ENSDART00000125892
|
TPM1-204 | protein_coding | Danio_rerio | 0 | 222 |
|
ENST00000267996
|
TPM1-005 | protein_coding | Homo_sapiens | 0 | 833 |
|
ENST00000288398
|
TPM1-001 | protein_coding | Homo_sapiens | 0 | 616 |
|
ENST00000317516
|
TPM1-016 | protein_coding | Homo_sapiens | 0 | 616 |
|
ENST00000334895
|
TPM1-011 | protein_coding | Homo_sapiens | 0 | 460 |
|
ENST00000357980
|
TPM1-008 | protein_coding | Homo_sapiens | 0 | 833 |
|
ENST00000358278
|
TPM1-018 | protein_coding | Homo_sapiens | 0 | 989 |
|
ENST00000403994
|
TPM1-002 | protein_coding | Homo_sapiens | 0 | 460 |
|
ENST00000404484
|
TPM1-012 | protein_coding | Homo_sapiens | 0 | 989 |
|
ENST00000558072
|
TPM1-025 | retained_intron | Homo_sapiens | 0 | 364 |
|
ENST00000558264
|
TPM1-017 | nonsense_mediated_decay | Homo_sapiens | 0 | 566 |
|
ENST00000558314
|
TPM1-006 | retained_intron | Homo_sapiens | 0 | 414 |
|
ENST00000558347
|
TPM1-009 | nonsense_mediated_decay | Homo_sapiens | 0 | 822 |
|
ENST00000558400
|
TPM1-030 | retained_intron | Homo_sapiens | 7.00649e-43 | 178 |
|
ENST00000558544
|
TPM1-013 | nonsense_mediated_decay | Homo_sapiens | 0 | 1168 |
|
ENST00000558868
|
TPM1-021 | retained_intron | Homo_sapiens | 0 | 300 |
|
ENST00000559108
|
TPM1-031 | retained_intron | Homo_sapiens | 0 | 191 |
|
ENST00000559281
|
TPM1-015 | protein_coding | Homo_sapiens | 0 | 460 |
|
ENST00000559397
|
TPM1-010 | protein_coding | Homo_sapiens | 0 | 989 |
|
ENST00000559556
|
TPM1-028 | protein_coding | Homo_sapiens | 0 | 634 |
|
ENST00000559831
|
TPM1-029 | nonsense_mediated_decay | Homo_sapiens | 0 | 429 |
|
ENST00000560615
|
TPM1-022 | protein_coding | Homo_sapiens | 0 | 507 |
|
ENST00000560959
|
TPM1-014 | protein_coding | Homo_sapiens | 0 | 614 |
|
ENST00000560970
|
TPM1-003 | protein_coding | Homo_sapiens | 0 | 460 |
|
ENST00000560975
|
TPM1-007 | retained_intron | Homo_sapiens | 0 | 431 |
|
ENST00000561242
|
TPM1-032 | retained_intron | Homo_sapiens | 0.000000000003 | 77 |
|
ENST00000561266
|
TPM1-027 | protein_coding | Homo_sapiens | 0 | 460 |
|
ENST00000561395
|
TPM1-033 | nonsense_mediated_decay | Homo_sapiens | 0 | 193 |
