C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alpha-tropomyosin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000054763 tpma-202 ENSDARG00000033683 7955 + 7:31291304-31297120 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyENSDART00000054763
Transcript ID Brain Heart Kidney
ENSDART00000054763 6.274±4.03 1.065±0.00 29.770±21.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000502 CIL_000502_0001 CGP 7:31200056-31297120

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003575 Tpm4-001 protein_coding Mus_musculus 0 331
ENSMUST00000029549 Tpm3-003 protein_coding Mus_musculus 0 333
ENSMUST00000030185 Tpm1-002 protein_coding Mus_musculus 0 643
ENSMUST00000034928 Tpm1-008 protein_coding Mus_musculus 0 544
ENSMUST00000050905 Tpm1-004 protein_coding Mus_musculus 0 536
ENSMUST00000062193 Tpm3-201 protein_coding Mus_musculus 0 333
ENSMUST00000072359 Tpm3-rs7-201 protein_coding Mus_musculus 0 333
ENSMUST00000113684 Tpm1-020 protein_coding Mus_musculus 0 534
ENSMUST00000113685 Tpm1-003 protein_coding Mus_musculus 0 641
ENSMUST00000113686 Tpm1-014 protein_coding Mus_musculus 0 542
ENSMUST00000113687 Tpm1-012 protein_coding Mus_musculus 0 544
ENSMUST00000113689 Tpm1-021 protein_coding Mus_musculus 0 436
ENSMUST00000113690 Tpm1-013 protein_coding Mus_musculus 0 542
ENSMUST00000113693 Tpm1-011 protein_coding Mus_musculus 0 544
ENSMUST00000113695 Tpm1-016 protein_coding Mus_musculus 0 542
ENSMUST00000113696 Tpm1-015 protein_coding Mus_musculus 0 436
ENSMUST00000113697 Tpm1-006 protein_coding Mus_musculus 0 438
ENSMUST00000113701 Tpm1-010 protein_coding Mus_musculus 0 436
ENSMUST00000113705 Tpm1-007 protein_coding Mus_musculus 0 542
ENSMUST00000113707 Tpm1-001 protein_coding Mus_musculus 0 544
ENSMUST00000118566 Tpm3-004 protein_coding Mus_musculus 0 529
ENSMUST00000119158 Tpm3-005 protein_coding Mus_musculus 0 442
ENSMUST00000119570 Tpm3-001 protein_coding Mus_musculus 0 333
ENSMUST00000121503 Tpm3-002 protein_coding Mus_musculus 0 529
ENSMUST00000123177 Tpm4-002 processed_transcript Mus_musculus 0 237
ENSMUST00000127955 Tpm3-008 protein_coding Mus_musculus 2e-36 156
ENSMUST00000129466 Tpm1-019 retained_intron Mus_musculus 0 374
ENSMUST00000129733 Tpm1-009 nonsense_mediated_decay Mus_musculus 0 206
ENSMUST00000131279 Tpm1-018 processed_transcript Mus_musculus 0 322
ENSMUST00000131354 Tpm3-006 retained_intron Mus_musculus 0 270
ENSMUST00000147430 Tpm3-011 retained_intron Mus_musculus 0 270
ENSMUST00000149115 Tpm3-009 retained_intron Mus_musculus 0 204
ENSMUST00000149432 Tpm3-007 protein_coding Mus_musculus 0 298
ENSMUST00000153199 RP24-113B3.2-001 processed_pseudogene Mus_musculus 0 313
ENST00000267996 TPM1-005 protein_coding Homo_sapiens 0 492
ENST00000288398 TPM1-001 protein_coding Homo_sapiens 0 475
ENST00000317516 TPM1-016 protein_coding Homo_sapiens 0 375
ENST00000329305 TPM2-006 protein_coding Homo_sapiens 0 449
ENST00000334895 TPM1-011 protein_coding Homo_sapiens 0 492
ENST00000357980 TPM1-008 protein_coding Homo_sapiens 0 494
ENST00000358278 TPM1-018 protein_coding Homo_sapiens 0 377
ENST00000360958 TPM2-002 protein_coding Homo_sapiens 0 523
ENST00000378292 TPM2-001 protein_coding Homo_sapiens 0 372
ENST00000378300 TPM2-005 protein_coding Homo_sapiens 0 449
ENST00000403994 TPM1-002 protein_coding Homo_sapiens 0 592
ENST00000404484 TPM1-012 protein_coding Homo_sapiens 0 375
ENST00000471212 TPM2-003 retained_intron Homo_sapiens 0 329
ENST00000558264 TPM1-017 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000558314 TPM1-006 retained_intron Homo_sapiens 0 324
ENST00000558347 TPM1-009 nonsense_mediated_decay Homo_sapiens 7.00005e-41 172
ENST00000558400 TPM1-030 retained_intron Homo_sapiens 0 265
ENST00000558868 TPM1-021 retained_intron Homo_sapiens 0 322
ENST00000558910 TPM1-023 protein_coding Homo_sapiens 1e-23 115
ENST00000559281 TPM1-015 protein_coding Homo_sapiens 0 590
ENST00000559397 TPM1-010 protein_coding Homo_sapiens 0 375
ENST00000559556 TPM1-028 protein_coding Homo_sapiens 0 494
ENST00000559831 TPM1-029 nonsense_mediated_decay Homo_sapiens 0 324
ENST00000560131 TPM1-026 retained_intron Homo_sapiens 5e-23 111
ENST00000560615 TPM1-022 protein_coding Homo_sapiens 0 327
ENST00000560679 TPM1-024 protein_coding Homo_sapiens 0 207
ENST00000560959 TPM1-014 protein_coding Homo_sapiens 0 375
ENST00000560970 TPM1-003 protein_coding Homo_sapiens 0 592
ENST00000560975 TPM1-007 retained_intron Homo_sapiens 0 322
ENST00000561266 TPM1-027 protein_coding Homo_sapiens 0 588
ENST00000561395 TPM1-033 nonsense_mediated_decay Homo_sapiens 0 285
ENST00000592822 TPM4-019 protein_coding Homo_sapiens 3.00018e-42 174

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