C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, beta 4 (neuronal)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559849 CHRNB4-002 ENSG00000117971 9606 - 15:78629353-78660532 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungMuscleOvaryENST00000559849
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Muscle Ovary
ENST00000559849 0.032±0.00 0.081±0.00 0.049±0.00 0.030±0.00 0.082±0.00 0.007±0.00 0.060±0.00 0.007±0.00 0.015±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KZ CIL_0001KZ_0001 CGP 15:78593052-78727754

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0006810 IEA transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034220 IEA ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034854 Chrnb4-201 protein_coding Mus_musculus 0 750
ENSMUST00000029562 Chrnb2-201 protein_coding Mus_musculus 0 501
ENSDART00000008870 CHRNB4-201 protein_coding Danio_rerio 0 466
ENSDART00000079613 chrna2b-201 protein_coding Danio_rerio 4e-25 121
ENSDART00000136317 chrna2b-001 protein_coding Danio_rerio 4e-25 121
ENSMUST00000183937 Gm4707-013 protein_coding Mus_musculus 0.0001 53

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