C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001KZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000080644-ENSG00000117971 CGP 9606 15:78593052-78727754
GeneTranscriptPositionBiotype
ENSG00000080644 (CHRNA3)
cholinergic receptor, nicotinic, alpha 3 (neuronal) 		ENST00000326828 (CHRNA3-001) 78595305-78621179 protein_coding
ENST00000348639 (CHRNA3-002) 78593052-78621295 protein_coding
ENST00000558903 (CHRNA3-008) 78601776-78607524 processed_transcript
ENST00000559002 (CHRNA3-004) 78593052-78596732 processed_transcript
ENST00000559080 (CHRNA3-007) 78618630-78619278 protein_coding
ENST00000559658 (CHRNA3-003) 78593052-78620863 nonsense_mediated_decay
ENST00000559941 (CHRNA3-006) 78618849-78620261 processed_transcript
ENST00000561128 (CHRNA3-005) 78618380-78620789 retained_intron
ENSG00000117971 (CHRNB4)
cholinergic receptor, nicotinic, beta 4 (neuronal) 		ENST00000261751 (CHRNB4-001) 78624119-78641245 protein_coding
ENST00000412074 (CHRNB4-003) 78624408-78641245 protein_coding
ENST00000558216 (CHRNB4-005) 78692578-78727754 processed_transcript
ENST00000559849 (CHRNB4-002) 78629353-78660532 nonsense_mediated_decay
ENST00000560511 (CHRNB4-004) 78631062-78720286 processed_transcript
ENST00000560868 (CHRNB4-006) 78686918-78708052 processed_transcript
ENSG00000169684 (CHRNA5)
cholinergic receptor, nicotinic, alpha 5 (neuronal) 		ENST00000299565 (CHRNA5-001) 78565520-78595269 protein_coding
ENST00000394802 (CHRNA5-002) 78580890-78593274 protein_coding
ENST00000559554 (CHRNA5-003) 78565571-78593535 protein_coding
ENST00000559576 (CHRNA5-004) 78590362-78593701 protein_coding
ENSG00000213307 (RPL18P11)
ribosomal protein L18 pseudogene 11 		ENST00000494933 (RPL18P11-001) 78661047-78661576 processed_pseudogene
ENSG00000259555 (RP11-335K5.2)
 ENST00000559120 (RP11-335K5.2-001) 78625895-78628193 antisense
ENSG00000261303 (RP11-160C18.2)
 ENST00000564933 (RP11-160C18.2-001) 78727177-78735495 transcribed_unprocessed_pseudogene
ENST00000565476 (RP11-160C18.2-003) 78703776-78729770 processed_transcript
ENST00000568337 (RP11-160C18.2-004) 78729041-78733956 processed_transcript
ENST00000569846 (RP11-160C18.2-005) 78660644-78703884 processed_transcript
ENST00000570227 (RP11-160C18.2-002) 78733692-78735420 processed_transcript
ENSG00000279421 (RP11-335K5.3)
 ENST00000624172 (RP11-335K5.3-001) 78599892-78600013 TEC
CIL_0001KZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032303-ENSMUSG00000035200 CGP 10090 9:55011343-55048544
GeneTranscriptPositionBiotype
ENSMUSG00000032303 (Chrna3)
cholinergic receptor, nicotinic, alpha polypeptide 3 		ENSMUST00000034851 (Chrna3-201) 55011343-55026559 protein_coding
ENSMUSG00000035200 (Chrnb4)
cholinergic receptor, nicotinic, beta polypeptide 4 		ENSMUST00000034854 (Chrnb4-201) 55028156-55048544 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001KZ_0001ENSG00000080644ENST00000326828ENST00000348639ENST00000558903ENST00000559002ENST00000559080ENST00000559658ENST00000559941ENST00000561128ENSG00000117971ENST00000261751ENST00000412074ENST00000558216ENST00000559849ENST00000560511ENST00000560868ENSG00000169684ENST00000299565ENST00000394802ENST00000559554ENST00000559576ENSG00000213307ENST00000494933ENSG00000259555ENST00000559120ENSG00000261303ENST00000564933ENST00000565476ENST00000568337ENST00000569846ENST00000570227ENSG00000279421ENST00000624172CIL_0001KZ_0002ENSMUSG00000032303ENSMUST00000034851ENSMUSG00000035200ENSMUST00000034854
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001KZ_0001ENSG00000080644ENST00000326828ENST00000348639ENST00000558903ENST00000559658ENST00000561128ENSG00000117971ENST00000261751ENST00000412074ENST00000558216ENST00000559849ENST00000560868ENSG00000169684ENST00000299565ENST00000394802ENST00000559554ENST00000559576ENSG00000213307ENST00000494933ENSG00000259555ENST00000559120ENSG00000261303ENST00000564933ENST00000565476ENSG00000279421ENST00000624172CIL_0001KZ_0002ENSMUSG00000032303ENSMUST00000034851ENSMUSG00000035200ENSMUST00000034854
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000080644 ENST00000326828 N/A 1.112±0.00 N/A N/A 0.566±0.00 1.381±0.99 N/A N/A 0.304±0.00 N/A N/A N/A 0.099±0.00 0.357±0.00
ENST00000348639 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00 N/A N/A N/A N/A
ENST00000558903 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.495±0.00 N/A N/A N/A N/A
ENST00000559002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559658 N/A N/A N/A N/A N/A 0.376±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561128 N/A N/A 0.914±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000117971 ENST00000261751 N/A 1.523±0.00 N/A N/A N/A 0.454±0.05 N/A N/A N/A N/A N/A 0.112±0.04 N/A 2.498±1.86
ENST00000412074 0.112±0.00 N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A 0.113±0.00 0.029±0.00 N/A N/A N/A
ENST00000558216 0.092±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559849 0.032±0.00 N/A N/A 0.081±0.00 0.049±0.00 N/A 0.030±0.00 0.082±0.00 0.007±0.00 0.060±0.00 0.007±0.00 0.015±0.00 N/A N/A
ENST00000560511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.241±0.00 N/A N/A
ENSG00000169684 ENST00000299565 N/A N/A N/A 0.050±0.00 0.104±0.00 N/A 0.027±0.00 0.109±0.00 0.069±0.05 N/A N/A 0.028±0.00 0.052±0.00 N/A
ENST00000394802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.191±0.00 N/A N/A
ENST00000559554 N/A N/A N/A 0.444±0.00 N/A N/A 0.206±0.14 N/A 0.441±0.00 N/A 0.201±0.00 0.763±0.71 0.737±0.75 2.596±1.53
ENST00000559576 N/A N/A N/A N/A 2.135±0.00 N/A N/A N/A N/A 0.229±0.00 0.261±0.00 0.442±0.18 0.299±0.08 N/A
ENSG00000213307 ENST00000494933 N/A N/A N/A N/A N/A N/A 0.045±0.00 N/A N/A N/A 0.209±0.00 N/A N/A N/A
ENSG00000259555 ENST00000559120 0.064±0.00 0.212±0.00 N/A 0.218±0.00 0.042±0.00 0.076±0.05 0.070±0.00 0.158±0.00 0.044±0.00 0.125±0.00 0.007±0.00 0.039±0.02 N/A 0.403±0.13
ENSG00000261303 ENST00000564933 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A 1.363±0.53
ENST00000565476 N/A N/A N/A 0.057±0.00 0.055±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000279421 ENST00000624172 N/A 0.740±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.737±0.00 N/A 0.496±0.16
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032303 ENSMUST00000034851 0.014±0.00 11.111±3.77 0.167±0.02 3.372±2.40 0.026±0.01 2.758±0.27 0.282±0.08 0.576±0.32 0.010±0.01 0.068±0.03 N/A 0.051±0.04 0.020±0.02 0.048±0.03
ENSMUSG00000035200 ENSMUST00000034854 0.105±0.09 3.183±1.11 0.109±0.01 0.422±0.26 0.692±0.15 1.631±0.44 0.094±0.03 0.265±0.15 0.010±0.00 0.104±0.03 0.031±0.02 0.049±0.02 0.069±0.05 0.281±0.19

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