C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | sorting nexin 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000560260  |
SNX1-006 |
ENSG00000028528 |
9606 | + |
15:64096004-64134954  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_000509 | CIL_000509_0002 | CGP | 15:64094123-64157481 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0006886 | IEA | intracellular protein transport |
| GO:0030904 | IEA | retromer complex |
| GO:0035091 | IEA | phosphatidylinositol binding |
| GO:0042147 | IEA | retrograde transport, endosome to Golgi |
| GO:0043231 | IDA | intracellular membrane-bounded organelle |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000034946
|
Snx1-001 | protein_coding | Mus_musculus | 0 | 785 |
|
ENSMUST00000145449
|
Snx1-003 | retained_intron | Mus_musculus | 0 | 357 |
|
ENSMUST00000132841
|
Snx1-007 | retained_intron | Mus_musculus | 0 | 206 |
|
ENSMUST00000143148
|
Snx1-002 | retained_intron | Mus_musculus | 2e-35 | 154 |
|
ENSMUST00000137542
|
Snx1-006 | protein_coding | Mus_musculus | 5e-32 | 143 |
