C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 42
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000560329 NPM1P42-001 ENSG00000259259 9606 - 15:72899399-72900260 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryTestisENST00000560329
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Testis
ENST00000560329 0.013±0.00 0.068±0.00 0.052±0.00 0.052±0.00 0.061±0.00 0.012±0.00 0.027±0.00 0.026±0.00 0.024±0.00 0.020±0.00 0.071±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005DF CIL_0005DF_0002 CGP 15:72751369-73305206

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 824
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 719
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 678
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 252
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 4e-31 139

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