C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141881 Npm1-004 ENSMUSG00000057113 10090 - 11:33152511-33154465 processed_transcript

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092S CIL_00092S_0002 VISTA 11:32891798-33493112
CIL_00097F CIL_00097F_0002 VISTA 11:32999598-33601607
CIL_00088M CIL_00088M_0002 VISTA 11:33042866-33643782
CIL_000977 CIL_000977_0002 VISTA 11:33092412-33693558
CIL_00098H CIL_00098H_0002 VISTA 11:33099828-33701076
CIL_0008SG CIL_0008SG_0002 VISTA 11:33129906-33731024
CIL_0004OL CIL_0004OL_0002 CGP 11:33152287-33203589

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290855 CLEC2D-001 protein_coding Homo_sapiens 0 523
ENST00000296930 NPM1-001 protein_coding Homo_sapiens 0 562
ENST00000343743 NPM1P14-001 processed_pseudogene Homo_sapiens 9e-33 145
ENST00000351986 NPM1-002 protein_coding Homo_sapiens 0 562
ENST00000396690 CLEC2D-001 processed_pseudogene Homo_sapiens 3e-37 159
ENST00000399556 NPM1P46-001 processed_pseudogene Homo_sapiens 2e-39 167
ENST00000403105 NPM1P37-001 processed_pseudogene Homo_sapiens 8.99634e-43 178
ENST00000403835 NPM1P38-001 processed_pseudogene Homo_sapiens 2e-39 167
ENST00000414095 NPM1P4-001 processed_pseudogene Homo_sapiens 2e-39 167
ENST00000415681 NPM1P36-001 processed_pseudogene Homo_sapiens 1e-31 141
ENST00000423757 NPM1P12-001 processed_pseudogene Homo_sapiens 4e-36 156
ENST00000428039 NPM1P24-001 processed_pseudogene Homo_sapiens 3e-37 159
ENST00000428821 NPM1P34-001 processed_pseudogene Homo_sapiens 9e-38 161
ENST00000429734 NPM1P25-001 processed_pseudogene Homo_sapiens 1e-35 154
ENST00000436002 NPM1P48-001 processed_pseudogene Homo_sapiens 4e-36 156
ENST00000438918 NPM1P33-001 processed_pseudogene Homo_sapiens 4e-36 156
ENST00000449818 NPM1P39-001 processed_pseudogene Homo_sapiens 2e-38 163
ENST00000452663 NPM1P13-001 processed_pseudogene Homo_sapiens 7e-29 132
ENST00000453156 NPM1P9-001 processed_pseudogene Homo_sapiens 4e-36 156
ENST00000458237 NPM1P8-001 processed_pseudogene Homo_sapiens 7e-39 165
ENST00000492269 NPM1P28-001 processed_pseudogene Homo_sapiens 3e-32 143
ENST00000502784 NPM1P27-001 processed_pseudogene Homo_sapiens 9.99995e-41 171
ENST00000512920 NPM1P41-001 processed_pseudogene Homo_sapiens 9e-28 128
ENST00000517671 NPM1-004 protein_coding Homo_sapiens 0 562
ENST00000521088 NPM1P6-001 processed_pseudogene Homo_sapiens 7e-39 165
ENST00000524204 NPM1-012 retained_intron Homo_sapiens 0 577
ENST00000532878 NPM1P50-001 processed_pseudogene Homo_sapiens 7e-39 165
ENST00000533043 NPM1P35-001 processed_pseudogene Homo_sapiens 1e-21 108
ENST00000557228 NPM1P5-001 processed_pseudogene Homo_sapiens 7e-34 148
ENST00000560329 NPM1P42-001 processed_pseudogene Homo_sapiens 4e-31 139
ENST00000578162 NPM1P2-001 processed_pseudogene Homo_sapiens 1e-35 154
ENST00000588959 RP11-188I24.1-001 processed_pseudogene Homo_sapiens 2.00386e-43 178

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