C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuroplastin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000562924 NPTN-008 ENSG00000156642 9606 - 15:73560834-73633243 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000562924
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000562924 11.809±0.00 13.615±0.00 3.803±0.00 43.121±5.73 10.360±0.48 15.168±8.84 34.652±24.57 13.441±10.89 5.092±0.32 23.356±16.32 3.984±1.98 24.442±7.78 31.932±3.41 17.559±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000HP CIL_0000HP_0002 CGP 15:73319859-73560014
CIL_0005CB CIL_0005CB_0002 CGP 15:73443158-73634134

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001934 ISS positive regulation of protein phosphorylation
GO:0005105 ISS type 1 fibroblast growth factor receptor binding
GO:0005515 IEA protein binding
GO:0007156 ISS homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007204 ISS positive regulation of cytosolic calcium ion concentration
GO:0009986 IDA cell surface
GO:0010976 ISS positive regulation of neuron projection development
GO:0016021 IEA integral component of membrane
GO:0042734 ISS presynaptic membrane
GO:0045743 ISS positive regulation of fibroblast growth factor receptor signaling pathway
GO:0048170 ISS positive regulation of long-term neuronal synaptic plasticity
GO:0050839 ISS cell adhesion molecule binding
GO:0060291 ISS long-term synaptic potentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176557 Nptn-012 protein_coding Mus_musculus 0 1507
ENSMUST00000085651 Nptn-001 protein_coding Mus_musculus 0 1458
ENSMUST00000114121 Nptn-201 protein_coding Mus_musculus 0 1134
ENSMUST00000177292 Nptn-003 protein_coding Mus_musculus 0 966
ENSMUST00000176896 Nptn-010 nonsense_mediated_decay Mus_musculus 0 821
ENSMUST00000176916 Nptn-006 nonsense_mediated_decay Mus_musculus 0 815
ENSMUST00000175945 Nptn-009 nonsense_mediated_decay Mus_musculus 0 667
ENSMUST00000176250 Nptn-005 protein_coding Mus_musculus 0 604
ENSMUST00000177064 Nptn-007 protein_coding Mus_musculus 0 590
ENSMUST00000177380 Nptn-002 non_stop_decay Mus_musculus 0 544
ENSMUST00000176126 Nptn-008 processed_transcript Mus_musculus 0 497
ENSMUST00000177021 Nptn-004 retained_intron Mus_musculus 0 444

Loading